Variant report

Variant	rs1396709
Chromosome Location	chr4:110378688-110378689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110377229..110379523-chr4:110388422..110390355,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11098034	0.89[ASN][1000 genomes]
rs16997060	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28558699	0.90[EUR][1000 genomes]
rs6821550	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110358000-110384000	Weak transcription	Fetal Brain Male	brain
2	chr4:110358000-110384200	Weak transcription	Colonic Mucosa	Colon
3	chr4:110360400-110384200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr4:110363000-110384200	Weak transcription	Esophagus	oesophagus
5	chr4:110363600-110383600	Weak transcription	Pancreas	Pancrea
6	chr4:110363600-110383600	Weak transcription	NHDF-Ad	bronchial
7	chr4:110363600-110384200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:110363600-110384200	Weak transcription	Hela-S3	cervix
9	chr4:110363600-110398400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:110364600-110384200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:110365000-110383400	Weak transcription	Fetal Heart	heart
12	chr4:110365000-110384000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:110365200-110384200	Weak transcription	Aorta	Aorta
14	chr4:110366000-110391400	Weak transcription	Small Intestine	intestine
15	chr4:110367400-110383600	Weak transcription	HUVEC	blood vessel
16	chr4:110367600-110383200	Weak transcription	Right Ventricle	heart
17	chr4:110367600-110383800	Weak transcription	NHLF	lung
18	chr4:110367600-110384000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:110367600-110384200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:110367600-110384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:110367600-110384200	Weak transcription	Brain Germinal Matrix	brain
22	chr4:110367800-110380800	Weak transcription	Brain Angular Gyrus	brain
23	chr4:110367800-110383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:110367800-110383800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:110367800-110384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:110367800-110384200	Weak transcription	Fetal Kidney	kidney
27	chr4:110367800-110384200	Weak transcription	Osteobl	bone
28	chr4:110368000-110383400	Weak transcription	HMEC	breast
29	chr4:110368000-110383600	Weak transcription	HepG2	liver
30	chr4:110368000-110384200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:110368600-110383600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr4:110369000-110384200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr4:110369200-110384200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:110371200-110382200	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:110371400-110381400	Weak transcription	Brain Anterior Caudate	brain
36	chr4:110371400-110382800	Weak transcription	NH-A	brain
37	chr4:110371400-110383000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr4:110371400-110383200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr4:110371400-110383200	Weak transcription	Spleen	Spleen
40	chr4:110371400-110384000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr4:110371400-110384000	Weak transcription	Fetal Brain Female	brain
42	chr4:110371400-110384200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:110371400-110384200	Weak transcription	Lung	lung
44	chr4:110371400-110384200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:110371400-110393200	Weak transcription	Stomach Mucosa	stomach
46	chr4:110371600-110383000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr4:110371600-110383800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr4:110371600-110393400	Weak transcription	HSMMtube	muscle
49	chr4:110372200-110384200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:110372600-110383000	Weak transcription	Right Atrium	heart

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