Variant report

Variant	rs1397190
Chromosome Location	chr3:156376555-156376556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12632784	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4680294	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs4680295	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[EUR][1000 genomes]
rs60983118	0.85[ASN][1000 genomes]
rs61702298	0.85[ASN][1000 genomes]
rs73013991	0.85[ASN][1000 genomes]
rs7609790	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156360000-156376600	Weak transcription	Psoas Muscle	Psoas
2	chr3:156375000-156378600	Weak transcription	GM12878-XiMat	blood
3	chr3:156375400-156376600	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr3:156375400-156377400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr3:156375400-156377600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:156375600-156376600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr3:156375600-156381800	Weak transcription	K562	blood
8	chr3:156375800-156376600	Enhancers	Colonic Mucosa	Colon
9	chr3:156376000-156376600	Enhancers	Fetal Kidney	kidney
10	chr3:156376200-156377400	Enhancers	HSMMtube	muscle
11	chr3:156376200-156377600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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