Variant report

Variant	rs139720550
Chromosome Location	chr19:37483361-37483362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
15	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
17	esv3436624	chr19:37475858-37484722	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
18	nsv911653	chr19:37482151-37556673	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37465000-37487200	Weak transcription	Placenta	Placenta
2	chr19:37465400-37483400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:37465400-37483600	Weak transcription	Fetal Heart	heart
4	chr19:37468800-37487800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr19:37472000-37483600	Weak transcription	Osteobl	bone
6	chr19:37472200-37485800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr19:37472200-37487000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr19:37472200-37487400	Weak transcription	Brain Angular Gyrus	brain
9	chr19:37476600-37483400	Strong transcription	Fetal Stomach	stomach
10	chr19:37476800-37489400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:37479200-37489000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:37479800-37489000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr19:37480200-37486400	ZNF genes & repeats	Fetal Brain Female	brain
14	chr19:37480400-37483600	Strong transcription	Fetal Lung	lung
15	chr19:37480400-37488800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:37480400-37489000	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr19:37480400-37489000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr19:37480400-37489000	ZNF genes & repeats	Liver	Liver
19	chr19:37481400-37489000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr19:37481600-37483400	Strong transcription	Ovary	ovary
21	chr19:37481600-37483600	Strong transcription	Brain Anterior Caudate	brain
22	chr19:37481600-37483800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr19:37481600-37483800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr19:37481600-37488600	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr19:37481800-37483400	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr19:37481800-37483400	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr19:37481800-37483600	Strong transcription	Colon Smooth Muscle	Colon
28	chr19:37481800-37483800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
29	chr19:37481800-37484000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
30	chr19:37481800-37484000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:37481800-37484000	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr19:37481800-37484200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr19:37481800-37484200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr19:37481800-37484600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:37481800-37488800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
36	chr19:37481800-37489400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
37	chr19:37482000-37483400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr19:37482000-37483600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr19:37482000-37483800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr19:37482000-37484000	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr19:37482000-37484600	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr19:37482200-37486400	ZNF genes & repeats	Brain Germinal Matrix	brain
43	chr19:37482200-37486400	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr19:37482400-37483400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr19:37482400-37483400	Strong transcription	Fetal Brain Male	brain
46	chr19:37482400-37483600	Strong transcription	Brain Hippocampus Middle	brain
47	chr19:37482400-37483600	Strong transcription	Rectal Smooth Muscle	rectum
48	chr19:37482400-37483600	Strong transcription	Dnd41	blood
49	chr19:37482400-37483800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr19:37482400-37483800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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