Variant report

Variant	rs139725009
Chromosome Location	chr1:152646539-152646540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:152646533-152646583	HRE	kidney:	n/a
2	chr1:152646533-152646583	AG09319	gingival:	n/a
3	chr1:152646533-152646583	HPAEpiC	pulmonary alveolar:	n/a
4	chr1:152646533-152646583	SK-N-MC	brain:	n/a
5	chr1:152646533-152646583	PANC-1	pancreas:	n/a
6	chr1:152646533-152646583	HEEpiC	esophagus:	n/a
7	chr1:152646533-152646583	Hepatocyte	liver:	n/a
8	chr1:152646533-152646583	T-47D	breast:	n/a
9	chr1:152646533-152646583	HL-60	blood:	n/a
10	chr1:152646533-152646583	HAEpiC	amniotic membrane:	n/a
11	chr1:152646533-152646583	U87	brain:	n/a
12	chr1:152646533-152646583	Hela-S3	cervix:	n/a
13	chr1:152646533-152646583	AG04450	lung:	fetal
14	chr1:152646533-152646583	AG10803	skin:	n/a
15	chr1:152646533-152646583	IMR90	lung:	fetal
16	chr1:152646533-152646583	HCT-116	colon:	n/a
17	chr1:152646533-152646583	SKMC	muscle:	n/a
18	chr1:152646533-152646583	NHDF-neo	bronchial:	n/a
19	chr1:152646533-152646583	RPTEC	kidney:	n/a
20	chr1:152646533-152646583	MCF-7	breast:	n/a
21	chr1:152646533-152646583	K562	blood:	n/a
22	chr1:152646533-152646583	NHBE	bronchial:	n/a
23	chr1:152646533-152646583	GM12891	blood:	n/a
24	chr1:152646533-152646583	SK-N-SH_RA	brain:	n/a
25	chr1:152646533-152646583	GM19239	blood:	n/a
26	chr1:152646533-152646583	ECC-1	luminal epithelium:	n/a
27	chr1:152646533-152646583	HNPCEpiC	eye:	n/a
28	chr1:152646533-152646583	HCM	heart:	n/a
29	chr1:152646533-152646583	HRCEpiC	kidney:	n/a
30	chr1:152646533-152646583	LNCaP	prostate:	n/a
31	chr1:152646533-152646583	ovcar-3	ovarian:	n/a
32	chr1:152646533-152646583	BJ	skin:	n/a
33	chr1:152646533-152646583	HUVEC	blood vessel:	n/a
34	chr1:152646533-152646583	AG04449	skin:	fetal
35	chr1:152646533-152646583	MCF10A-Er-Src	breast:	n/a
36	chr1:152646533-152646583	PrEC	prostate:	n/a
37	chr1:152646533-152646583	HepG2	liver:	n/a
38	chr1:152646533-152646583	HMEC	breast:	n/a
39	chr1:152646533-152646583	BE2_C	brain:	n/a
40	chr1:152646533-152646583	AoSMC	blood vessel:	n/a
41	chr1:152646533-152646583	SK-N-SH	brain:	n/a
42	chr1:152646533-152646583	A549	lung:	n/a
43	chr1:152646533-152646583	HRPEpiC	eye:	n/a
44	chr1:152646533-152646583	GM12878	blood:	n/a
45	chr1:152646533-152646583	CMK	blood:	n/a
46	chr1:152646533-152646583	SAEC	small airway:	n/a
47	chr1:152646533-152646583	GM06990	blood:	n/a
48	chr1:152646533-152646583	H1-hESC	embryonic stem cell:	embryo
49	chr1:152646533-152646583	Caco-2	colon:	n/a
50	chr1:152646533-152646583	NB4	blood:	n/a

No data

Variant related genes	Relation type
LCE2C	CpG island
LCE2B	CpG island

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750810	chr1:152453669-152660927	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1827111	chr1:152472839-152690073	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv1830764	chr1:152472839-152690073	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	esv33483	chr1:152550269-152775526	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv547891	chr1:152556085-152770446	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv469873	chr1:152563260-152713616	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv482518	chr1:152563260-152713616	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1001647	chr1:152572876-152678509	Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
13	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
14	nsv1005047	chr1:152636316-152656590	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3382870	chr1:152641788-152653697	Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv8413	chr1:152643327-152646982	Enhancers Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152646200-152649000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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