Variant report

Variant	rs139769305
Chromosome Location	chr3:111592666-111592667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111581231..111584187-chr3:111592422..111594692,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv980070	chr3:111592547-111602240	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111581400-111593800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:111582200-111593200	Weak transcription	Lung	lung
3	chr3:111584600-111593200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:111584600-111603400	Weak transcription	Fetal Intestine Large	intestine
5	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
6	chr3:111585400-111592800	Weak transcription	HSMM	muscle
7	chr3:111585400-111593400	Weak transcription	Psoas Muscle	Psoas
8	chr3:111585400-111603400	Weak transcription	Spleen	Spleen
9	chr3:111585400-111609000	Weak transcription	Esophagus	oesophagus
10	chr3:111586400-111593000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:111587200-111593000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:111587200-111593200	Weak transcription	Gastric	stomach
13	chr3:111587200-111597200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:111587200-111603000	Weak transcription	Placenta	Placenta
15	chr3:111587800-111599200	Weak transcription	Liver	Liver
16	chr3:111588000-111593800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:111589000-111593200	Enhancers	A549	lung
18	chr3:111589200-111598400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:111589200-111603400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:111589800-111593200	Weak transcription	NHLF	lung
21	chr3:111589800-111603400	Weak transcription	Pancreas	Pancrea
22	chr3:111590800-111593800	Enhancers	Colon Smooth Muscle	Colon
23	chr3:111591000-111593800	Enhancers	Fetal Stomach	stomach
24	chr3:111591200-111593200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:111591200-111593400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr3:111591200-111593800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:111591400-111593000	Weak transcription	HMEC	breast
28	chr3:111591400-111593200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:111591400-111593600	Enhancers	Adipose Nuclei	Adipose
30	chr3:111591400-111593800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:111591400-111594000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:111591400-111598400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:111591600-111592800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:111591600-111593000	Weak transcription	Right Ventricle	heart
35	chr3:111591600-111593200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr3:111591600-111593200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:111591600-111593200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:111591600-111593200	Weak transcription	Left Ventricle	heart
39	chr3:111591600-111593400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr3:111591600-111593600	Enhancers	Fetal Heart	heart
41	chr3:111591600-111593800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:111591600-111598400	Weak transcription	Right Atrium	heart
43	chr3:111591600-111603200	Weak transcription	Ovary	ovary
44	chr3:111591600-111603600	Weak transcription	HepG2	liver
45	chr3:111591600-111610600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
47	chr3:111591800-111592800	Enhancers	NHEK	skin
48	chr3:111591800-111593000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:111591800-111594000	Enhancers	Osteobl	bone
50	chr3:111592000-111592800	Weak transcription	Placenta Amnion	Placenta Amnion

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