Variant report

Variant	rs139897624
Chromosome Location	chr16:65269544-65269545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525526	chr16:65257891-65308021	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv906776	chr16:65257891-65315175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv906777	chr16:65263401-65312933	Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1062738	chr16:65268798-65308950	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65261600-65269800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:65267800-65269600	Active TSS	H9 Cell Line	embryonic stem cell
3	chr16:65268800-65274000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:65269200-65269600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr16:65269200-65269600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr16:65269200-65269600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr16:65269200-65269600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr16:65269200-65270200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr16:65269200-65270400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr16:65269200-65270400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr16:65269200-65270600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr16:65269400-65269600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr16:65269400-65269800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:65269400-65269800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:65269400-65270000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:65269400-65270200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr16:65269400-65270200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr16:65269400-65270600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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