Variant report

Variant	rs139924468
Chromosome Location	chr9:8244805-8244806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv892222	chr9:8172046-8253019	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv3693381	chr9:8231940-8268051	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1019092	chr9:8241736-8262808	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv613285	chr9:8244354-8270248	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8244200-8245200	Enhancers	Brain Hippocampus Middle	brain
2	chr9:8244400-8245200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr9:8244400-8245400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:8244600-8245000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr9:8244600-8245200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:8244600-8245400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:8244600-8247000	Enhancers	Brain Germinal Matrix	brain
8	chr9:8244800-8245200	Enhancers	Brain Cingulate Gyrus	brain
9	chr9:8244800-8245200	Active TSS	Brain Substantia Nigra	brain
10	chr9:8244800-8246200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:8244800-8246400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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