Variant report

Variant	rs1399420
Chromosome Location	chr4:91664865-91664866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10516877	1.00[CEU][hapmap];0.89[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996235	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17017429	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs17017436	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.91[ASN][1000 genomes]
rs17017443	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs17017458	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17017462	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17017468	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17017482	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs17017486	0.89[ASN][1000 genomes]
rs17017551	1.00[ASN][1000 genomes]
rs56981773	0.93[ASN][1000 genomes]
rs58313013	0.99[ASN][1000 genomes]
rs61133176	0.99[ASN][1000 genomes]
rs7678209	0.93[ASN][1000 genomes]
rs7680499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428766	chr4:91618397-91768647	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1399420	KLHL8	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91663800-91668200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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