Variant report
| Variant | rs139969018 |
|---|---|
| Chromosome Location | chr2:56154441-56154442 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA1 | chr2:56154245-56154487 | T-47D | breast: | n/a | n/a |
| 2 | CEBPB | chr2:56154199-56154469 | H1-hESC | embryonic stem cell: | n/a | chr2:56154322-56154333 |
| 3 | CEBPB | chr2:56154143-56154495 | A549 | lung: | n/a | chr2:56154322-56154333 |
| 4 | CEBPB | chr2:56154149-56154501 | Hela-S3 | cervix: | n/a | chr2:56154322-56154333 |
| 5 | CEBPB | chr2:56154142-56154492 | IMR90 | lung: | n/a | chr2:56154322-56154333 |
| 6 | CEBPB | chr2:56154099-56154490 | MCF-7 | breast: | n/a | chr2:56154322-56154333 |
| 7 | SETDB1 | chr2:56154269-56154762 | U2OS | brain: | n/a | n/a |
| 8 | CEBPB | chr2:56154185-56154462 | K562 | blood: | n/a | chr2:56154322-56154333 |
| 9 | CEBPB | chr2:56154142-56154498 | HepG2 | liver: | n/a | chr2:56154322-56154333 |
| 10 | KAP1 | chr2:56154259-56154640 | U2OS | brain: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:56149060..56151450-chr2:56151647..56155915,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| EFEMP1 | TF binding region |
| ENSG00000115380 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv519184 | chr2:56154316-56163904 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv874161 | chr2:56154316-56203798 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
