Variant report

Variant	rs1400307
Chromosome Location	chr11:83575425-83575426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10898162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607326	0.82[ASN][1000 genomes]
rs12273178	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1400308	0.82[ASN][1000 genomes]
rs41369951	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs60787865	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73520828	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898017	chr11:83556067-83583324	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv898018	chr11:83556067-83586526	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv898019	chr11:83556067-83602367	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898020	chr11:83558738-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv898021	chr11:83562296-83602367	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv898022	chr11:83562296-83602367	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv898023	chr11:83566115-83602367	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83567000-83576600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83572600-83575800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:83573200-83575600	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83573200-83575800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:83573200-83577400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:83574200-83576200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:83574200-83576600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83574200-83576800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:83574400-83575800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:83574400-83577000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:83574400-83577200	Enhancers	Stomach Smooth Muscle	stomach
12	chr11:83574600-83575600	Weak transcription	NHEK	skin
13	chr11:83574600-83577600	Enhancers	HMEC	breast
14	chr11:83574800-83575600	Enhancers	Fetal Stomach	stomach
15	chr11:83575000-83576800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:83575200-83575600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr11:83575200-83576600	Weak transcription	Brain Substantia Nigra	brain
18	chr11:83575200-83577400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:83575400-83576000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:83575400-83576400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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