Variant report

Variant	rs140059974
Chromosome Location	chr14:70690241-70690242
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:70690233-70690690	K562	blood:	n/a	n/a
2	CEBPB	chr14:70690174-70690468	HepG2	liver:	n/a	n/a
3	POLR2A	chr14:70689985-70690724	K562	blood:	n/a	n/a
4	POLR2A	chr14:70690240-70690650	K562	blood:	n/a	n/a
5	CEBPB	chr14:70690188-70690384	A549	lung:	n/a	n/a
6	TBP	chr14:70690042-70690705	K562	blood:	n/a	n/a
7	ELF1	chr14:70690229-70690741	K562	blood:	n/a	n/a
8	ZNF384	chr14:70690001-70690522	GM12878	blood:	n/a	n/a
9	MYC	chr14:70689995-70690804	K562	blood:	n/a	n/a
10	CEBPB	chr14:70690132-70690487	K562	blood:	n/a	n/a
11	IRF1	chr14:70690095-70690693	K562	blood:	n/a	n/a
12	POLR2A	chr14:70689886-70690682	K562	blood:	n/a	n/a
13	EP300	chr14:70690232-70690860	K562	blood:	n/a	n/a
14	RCOR1	chr14:70689971-70690808	K562	blood:	n/a	n/a
15	BHLHE40	chr14:70690031-70690525	K562	blood:	n/a	n/a
16	HEY1	chr14:70690234-70690602	K562	blood:	n/a	n/a
17	POLR2A	chr14:70689931-70690743	GM19099	blood:	n/a	n/a
18	POLR2A	chr14:70689998-70690697	K562	blood:	n/a	n/a
19	ZNF384	chr14:70689874-70690880	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000258422	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv3516672	chr14:70686699-70690597	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv3516666	chr14:70687049-70690447	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv565021	chr14:70688130-70690877	Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv565030	chr14:70688352-70690877	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv3345682	chr14:70689349-70691247	Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv3506856	chr14:70689958-70690350	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
9	esv3506854	chr14:70689969-70690333	Bivalent/Poised TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
10	esv3506853	chr14:70689987-70690275	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3530663	chr14:70689993-70690314	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
12	esv3506857	chr14:70690003-70690299	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
13	esv3294	chr14:70690021-70690352	Bivalent/Poised TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
14	esv3433854	chr14:70690023-70690269	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
15	esv3530664	chr14:70690037-70690248	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
16	esv3506858	chr14:70690053-70690257	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
17	esv3530665	chr14:70690053-70690257	Active TSS Bivalent/Poised TSS	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70689600-70690800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr14:70689600-70690800	Active TSS	K562	blood
3	chr14:70689600-70691000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:70689800-70690600	Active TSS	Primary hematopoietic stem cells	blood
5	chr14:70689800-70690800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:70689800-70690800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70690000-70690600	Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr14:70690000-70690600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:70690000-70690600	Active TSS	HSMM	muscle
10	chr14:70690000-70690600	Active TSS	NH-A	brain
11	chr14:70690000-70690800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:70690000-70691000	Active TSS	HSMMtube	muscle
13	chr14:70690200-70690400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
14	chr14:70690200-70690400	Active TSS	Placenta	Placenta
15	chr14:70690200-70690400	Bivalent/Poised TSS	Left Ventricle	heart
16	chr14:70690200-70690400	Active TSS	GM12878-XiMat	blood
17	chr14:70690200-70690600	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr14:70690200-70690600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr14:70690200-70690600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:70690200-70690600	Active TSS	Brain Cingulate Gyrus	brain
21	chr14:70690200-70690600	Active TSS	Duodenum Mucosa	Duodenum
22	chr14:70690200-70690600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
23	chr14:70690200-70690600	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
24	chr14:70690200-70690600	Active TSS	Fetal Thymus	thymus
25	chr14:70690200-70690600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
26	chr14:70690200-70690600	Bivalent/Poised TSS	NHEK	skin
27	chr14:70690200-70690800	Active TSS	H1 Cell Line	embryonic stem cell
28	chr14:70690200-70690800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:70690200-70690800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:70690200-70690800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:70690200-70690800	Active TSS	Adipose Nuclei	Adipose
32	chr14:70690200-70690800	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr14:70690200-70690800	Active TSS	Fetal Stomach	stomach
34	chr14:70690200-70690800	Active TSS	Psoas Muscle	Psoas
35	chr14:70690200-70690800	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood

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