Variant report

Variant	rs1400847
Chromosome Location	chr2:77072143-77072144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10165732	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10189408	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10191141	0.91[CEU][hapmap];0.82[TSI][hapmap]
rs11126573	1.00[CEU][hapmap]
rs11883849	0.82[CHB][hapmap]
rs11884591	0.81[CHB][hapmap]
rs11902250	0.85[AMR][1000 genomes]
rs12105500	0.86[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13385519	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13385839	0.82[CEU][hapmap]
rs13393238	0.82[CEU][hapmap]
rs13423635	0.82[CEU][hapmap]
rs1400845	0.82[CEU][hapmap]
rs1517772	0.86[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1517774	0.82[CHB][hapmap]
rs17013231	0.86[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17013234	0.82[CEU][hapmap];0.91[TSI][hapmap]
rs17013296	0.82[CEU][hapmap]
rs17013340	0.82[CEU][hapmap]
rs1829289	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs1914508	0.82[CHB][hapmap]
rs1929452	0.82[CEU][hapmap]
rs2020235	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2065375	0.82[CEU][hapmap]
rs2138901	0.86[CEU][hapmap];0.83[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2138902	0.86[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2178574	0.86[CEU][hapmap]
rs4277549	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4331533	1.00[CEU][hapmap];0.97[TSI][hapmap]
rs4340548	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4387822	0.82[CHB][hapmap]
rs4852419	0.86[CEU][hapmap];0.86[GIH][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes]
rs4853278	0.85[TSI][hapmap]
rs60473959	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6547100	0.82[CHB][hapmap]
rs6736181	0.82[CEU][hapmap]
rs67475248	0.85[AMR][1000 genomes]
rs6750897	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs6751097	0.82[CEU][hapmap]
rs68190355	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs721390	0.91[CEU][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs7558600	0.91[CEU][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7580043	0.82[CHB][hapmap]
rs7580390	0.82[CEU][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes]
rs7592470	0.82[CEU][hapmap]
rs7592608	0.82[CEU][hapmap]
rs7607547	0.82[CHB][hapmap]
rs953854	0.82[CEU][hapmap]
rs977744	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv520715	chr2:77021928-77080291	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874321	chr2:77031247-77113949	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv874323	chr2:77048896-77113949	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874325	chr2:77053916-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv458274	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv582250	chr2:77055883-77113949	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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