Variant report

Variant	rs140100539
Chromosome Location	chr10:19996962-19996963
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759737	chr10:19694144-20024994	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2758211	chr10:19714637-20024994	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1042877	chr10:19749314-20067572	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2757373	chr10:19776910-20004996	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv34306	chr10:19777069-20117944	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3518965	chr10:19786251-20061305	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3518966	chr10:19786310-20061256	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv825266	chr10:19807019-20037182	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv831804	chr10:19859400-20035593	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv894933	chr10:19865757-20036080	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1039685	chr10:19935095-20039621	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1046998	chr10:19973096-20031468	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv523490	chr10:19974930-20041146	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv1800486	chr10:19975850-19997603	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv1817534	chr10:19975850-19997603	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv1819435	chr10:19975850-19997603	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1817997	chr10:19991595-19998016	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
19	esv3479840	chr10:19994846-19999644	Enhancers Strong transcription Weak transcription	lncRNA	n/a	inside rSNPs	diseases
20	nsv825267	chr10:19995019-19997957	Enhancers Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv3519534	chr10:19995446-19999244	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
22	esv3519535	chr10:19995721-19999119	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3519536	chr10:19995721-19999119	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
24	esv3476507	chr10:19995971-19998819	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	esv3478729	chr10:19996186-19998589	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
26	esv2455504	chr10:19996260-19999072	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
27	esv3482062	chr10:19996396-19998594	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv3446698	chr10:19996435-19998173	Weak transcription	n/a	n/a	inside rSNPs	diseases
29	nsv825268	chr10:19996456-19998371	Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv8608	chr10:19996458-19998618	Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv3477618	chr10:19996476-19998230	Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv825269	chr10:19996478-19998164	Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv2389515	chr10:19996479-19998151	Weak transcription	n/a	n/a	inside rSNPs	diseases
34	esv3483173	chr10:19996484-19998230	Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv3480951	chr10:19996484-19998408	Weak transcription	n/a	n/a	inside rSNPs	diseases
36	nsv819054	chr10:19996507-19998415	Weak transcription	n/a	n/a	inside rSNPs	diseases
37	esv8408	chr10:19996515-19998169	Weak transcription	n/a	n/a	inside rSNPs	diseases
38	esv3314008	chr10:19996560-19997965	Weak transcription	n/a	n/a	inside rSNPs	diseases
39	esv3314030	chr10:19996645-19997965	Weak transcription	n/a	n/a	inside rSNPs	diseases
40	esv3314019	chr10:19996645-19998176	Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv825270	chr10:19996759-19997957	Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv825271	chr10:19996759-19998164	Weak transcription	n/a	n/a	inside rSNPs	diseases
43	nsv825272	chr10:19996759-19998371	Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv825273	chr10:19996960-19998164	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19986800-20000400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19989200-20000400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19992400-20000600	Weak transcription	Aorta	Aorta
4	chr10:19995200-20000000	Weak transcription	Fetal Intestine Large	intestine

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