Variant report

Variant	rs140115780
Chromosome Location	chr6:15764091-15764092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15763498..15765929-chr6:15906777..15908450,2	MCF-7	breast:
2	chr6:15759762..15765920-chr6:16126887..16131377,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2762581	chr6:15763793-15774802	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15759200-15770000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:15759800-15764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:15762200-15782000	Weak transcription	Pancreas	Pancrea
4	chr6:15763200-15766000	Enhancers	Fetal Intestine Large	intestine
5	chr6:15763400-15765200	Enhancers	Liver	Liver
6	chr6:15763400-15765600	Enhancers	Fetal Intestine Small	intestine
7	chr6:15763600-15764200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr6:15763600-15764400	Enhancers	NHDF-Ad	bronchial
9	chr6:15763600-15764800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:15763600-15764800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:15763600-15764800	Enhancers	Adipose Nuclei	Adipose
12	chr6:15763600-15764800	Enhancers	Fetal Kidney	kidney
13	chr6:15763600-15765000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:15763600-15765000	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:15763600-15765000	Enhancers	Fetal Lung	lung
16	chr6:15763600-15765600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:15763800-15764400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:15763800-15764600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:15763800-15764600	Enhancers	HepG2	liver
20	chr6:15763800-15764800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:15763800-15764800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:15763800-15764800	Enhancers	Fetal Heart	heart
23	chr6:15763800-15764800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr6:15763800-15765000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:15764000-15764200	Enhancers	NH-A	brain
26	chr6:15764000-15764400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr6:15764000-15764400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:15764000-15764400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:15764000-15764400	Enhancers	Fetal Stomach	stomach
30	chr6:15764000-15764400	Enhancers	Left Ventricle	heart
31	chr6:15764000-15764400	Enhancers	Stomach Mucosa	stomach
32	chr6:15764000-15764600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr6:15764000-15764600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:15764000-15764600	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:15764000-15764600	Enhancers	Fetal Muscle Leg	muscle
36	chr6:15764000-15764600	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr6:15764000-15764600	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links