Variant report

Variant	rs140140400
Chromosome Location	chr1:95127187-95127188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PRDM1	chr1:95127118-95127543	Hela-S3	cervix:	n/a	chr1:95127253-95127268
2	CEBPB	chr1:95127135-95127409	H1-hESC	embryonic stem cell:	n/a	n/a
3	NFYB	chr1:95127169-95127304	GM12878	blood:	n/a	n/a
4	CEBPB	chr1:95126571-95127497	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
LINC01057	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001587	chr1:95027691-95318680	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2755232	chr1:95119790-95151813	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv432509	chr1:95119790-95151813	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2756851	chr1:95119790-95158603	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv2758950	chr1:95119790-95158603	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv462528	chr1:95122518-95142843	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv546852	chr1:95122518-95142843	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv437227	chr1:95122565-95143548	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1001602	chr1:95125965-95153262	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1002928	chr1:95126536-95152838	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv998738	chr1:95126536-95155399	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95124200-95131800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:95125000-95133200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:95125400-95128400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:95125600-95128400	Enhancers	Hela-S3	cervix
5	chr1:95125800-95128800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:95125800-95128800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:95126000-95127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:95126000-95127400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr1:95126000-95127400	Enhancers	Fetal Heart	heart
10	chr1:95126000-95127600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:95126000-95128400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr1:95126000-95128600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:95126000-95128800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:95126000-95128800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:95126200-95127200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:95126200-95127800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr1:95126400-95127200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:95126400-95127400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:95126400-95127400	Enhancers	NHDF-Ad	bronchial
20	chr1:95126400-95127600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:95126400-95127600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:95126400-95127600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:95126400-95127600	Enhancers	Fetal Intestine Small	intestine
24	chr1:95126400-95127800	Enhancers	Fetal Intestine Large	intestine
25	chr1:95126400-95128400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr1:95126600-95127200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr1:95126600-95127200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr1:95126600-95127400	Enhancers	Stomach Mucosa	stomach
29	chr1:95126800-95127200	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr1:95126800-95128000	Weak transcription	Left Ventricle	heart
31	chr1:95126800-95133000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:95126800-95137800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr1:95126800-95141600	Weak transcription	Pancreas	Pancrea
34	chr1:95126800-95164200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:95127000-95127200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:95127000-95127400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:95127000-95127400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr1:95127000-95127600	Enhancers	Duodenum Mucosa	Duodenum
39	chr1:95127000-95130000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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