Variant report

Variant	rs140141325
Chromosome Location	chr15:75820184-75820185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75814778..75817471-chr15:75819035..75821931,2	K562	blood:

Variant related genes	Relation type
ENSG00000169410	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	nsv482802	chr15:75686519-75899896	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
8	nsv531902	chr15:75724505-75919237	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv904390	chr15:75795177-75840943	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv819520	chr15:75819453-75865881	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75798400-75824800	Weak transcription	Stomach Mucosa	stomach
2	chr15:75798400-75825000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:75798800-75820400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:75799400-75821800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:75801400-75820800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:75803200-75828000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:75803400-75820200	Strong transcription	Fetal Intestine Small	intestine
8	chr15:75809800-75821400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:75810000-75820800	Strong transcription	A549	lung
10	chr15:75810000-75823400	Weak transcription	Right Atrium	heart
11	chr15:75812200-75820200	Strong transcription	Fetal Thymus	thymus
12	chr15:75814600-75826400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:75815000-75823400	Weak transcription	Psoas Muscle	Psoas
14	chr15:75816000-75823000	Weak transcription	Brain Germinal Matrix	brain
15	chr15:75816000-75823400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:75816000-75823400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:75816000-75823400	Weak transcription	Brain Substantia Nigra	brain
18	chr15:75816000-75823400	Weak transcription	Right Ventricle	heart
19	chr15:75816000-75823400	Weak transcription	Small Intestine	intestine
20	chr15:75816000-75823400	Weak transcription	HMEC	breast
21	chr15:75816000-75823400	Weak transcription	HUVEC	blood vessel
22	chr15:75816000-75824600	Weak transcription	Esophagus	oesophagus
23	chr15:75816000-75824800	Weak transcription	Brain Angular Gyrus	brain
24	chr15:75816000-75824800	Weak transcription	Pancreas	Pancrea
25	chr15:75816000-75824800	Weak transcription	HepG2	liver
26	chr15:75816000-75824800	Weak transcription	K562	blood
27	chr15:75816000-75825000	Weak transcription	Aorta	Aorta
28	chr15:75816000-75838000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:75816200-75823400	Weak transcription	Fetal Kidney	kidney
30	chr15:75816200-75823400	Weak transcription	NHEK	skin
31	chr15:75816800-75823400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:75817000-75823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr15:75817400-75823400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:75817400-75823400	Weak transcription	HSMM	muscle
35	chr15:75817400-75823400	Weak transcription	NHDF-Ad	bronchial
36	chr15:75817600-75822000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr15:75817600-75823400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:75817600-75825000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr15:75817800-75843200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr15:75818200-75824400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:75818600-75823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:75819200-75820400	Weak transcription	Fetal Heart	heart
43	chr15:75819400-75820400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:75819400-75822800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr15:75819400-75823400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr15:75819400-75823400	Weak transcription	Brain Anterior Caudate	brain
47	chr15:75819400-75823400	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:75819400-75823400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:75819400-75823400	Weak transcription	NH-A	brain
50	chr15:75819400-75823400	Weak transcription	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links