Variant report

Variant	rs140143493
Chromosome Location	chr15:72670184-72670185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72667344..72672450-chr15:72764755..72768100,8	K562	blood:
2	chr15:72521644..72524080-chr15:72668948..72670929,2	MCF-7	breast:
3	chr15:72669000..72671381-chr15:72700452..72702096,2	MCF-7	breast:
4	chr15:72666558..72670735-chr15:72765041..72769475,12	MCF-7	breast:
5	chr15:72669180..72672003-chr15:72765406..72767515,3	K562	blood:
6	chr15:72668155..72670512-chr20:49346499..49348280,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv521971	chr15:72666424-72678738	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
7	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
8	nsv984090	chr15:72670090-72673769	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72669000-72673600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:72669200-72670200	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr15:72669200-72670200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr15:72669200-72670400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:72669200-72670400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:72669200-72670600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr15:72669200-72670600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:72669200-72672000	Weak transcription	HUVEC	blood vessel
9	chr15:72669200-72672600	Weak transcription	Right Atrium	heart
10	chr15:72669400-72670200	Enhancers	Primary B cells from cord blood	blood
11	chr15:72669400-72670200	Enhancers	Primary T cells from cord blood	blood
12	chr15:72669400-72670200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:72669400-72670200	Enhancers	Duodenum Mucosa	Duodenum
14	chr15:72669400-72670200	Enhancers	Fetal Intestine Large	intestine
15	chr15:72669400-72670200	Enhancers	Fetal Intestine Small	intestine
16	chr15:72669400-72670400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:72669400-72670600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr15:72669400-72670600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr15:72669600-72670200	Enhancers	HepG2	liver
20	chr15:72669800-72670400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr15:72669800-72672600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:72670000-72672400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:72670000-72675200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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