Variant report

Variant	rs1402028
Chromosome Location	chr8:61001507-61001508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60999306..61001965-chr8:61002281..61004182,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72663244	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7813224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv611419	chr8:60977819-61005850	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757276	chr8:60984213-61021843	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2759620	chr8:60984213-61021843	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3516269	chr8:60985447-61009090	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3516270	chr8:60985447-61009090	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv611420	chr8:60989109-61005850	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1027485	chr8:60989355-61007722	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1031967	chr8:60989355-61007757	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1028809	chr8:60989355-61007868	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1033495	chr8:60989355-61009620	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1015316	chr8:60989424-61007757	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3485713	chr8:60995448-61008946	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv6216	chr8:60995736-61010869	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3485710	chr8:60995848-61008896	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv8355	chr8:60996035-61007882	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3485705	chr8:60996041-61009082	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3480481	chr8:60996379-61007882	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3480480	chr8:60996394-61007891	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3485709	chr8:60996439-61007866	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3485706	chr8:60996445-61007838	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3485704	chr8:60996468-61007829	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3485707	chr8:60996493-61007826	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3485712	chr8:60996495-61007818	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv15677	chr8:60996528-61007764	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3485711	chr8:60996546-61007779	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv499796	chr8:60996549-61007777	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv3480482	chr8:60996550-61007777	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv3485714	chr8:60996550-61007777	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv515093	chr8:60996734-61007646	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv3692988	chr8:60997355-61005850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv433250	chr8:60997355-61005850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv465693	chr8:60997355-61005850	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv611421	chr8:60997355-61005850	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv818631	chr8:60997355-61005850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv2421389	chr8:60997355-61007769	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv517115	chr8:60997355-61008986	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv611422	chr8:60997355-61008986	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv1024760	chr8:60998730-61009620	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv1025247	chr8:60998730-61010127	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv1026659	chr8:60999098-61010127	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv1024426	chr8:60999476-61010534	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv982100	chr8:60999872-61004889	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv438060	chr8:61001507-61005850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61001200-61001600	Enhancers	HUES48 Cell Line	embryonic stem cell

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