Variant report

Variant	rs140242850
Chromosome Location	chr4:55104097-55104098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002905	chr4:55093677-55115698	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2763361	chr4:55102425-55107618	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
5	nsv1011682	chr4:55103816-55128149	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55100600-55104400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:55101000-55104200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:55101000-55104400	Weak transcription	HMEC	breast
4	chr4:55101000-55105200	Weak transcription	Aorta	Aorta
5	chr4:55101200-55105800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:55101200-55106400	Weak transcription	Right Atrium	heart
7	chr4:55101400-55104600	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:55101400-55110200	Weak transcription	Fetal Kidney	kidney
9	chr4:55102200-55105200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:55102600-55106200	Enhancers	Ovary	ovary
11	chr4:55102800-55106200	Enhancers	Placenta	Placenta
12	chr4:55102800-55109000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:55103400-55104200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:55103400-55105000	Strong transcription	NHLF	lung
15	chr4:55103400-55107000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr4:55103400-55110000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:55103600-55104200	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:55103800-55104200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:55103800-55104200	Active TSS	Colonic Mucosa	Colon
20	chr4:55103800-55104200	Enhancers	NHDF-Ad	bronchial
21	chr4:55103800-55105000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:55103800-55105800	Weak transcription	Fetal Stomach	stomach
23	chr4:55103800-55106200	Weak transcription	Fetal Lung	lung
24	chr4:55104000-55104200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:55104000-55104400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:55104000-55109400	Strong transcription	Osteobl	bone
27	chr4:55104000-55110000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links