Variant report

Variant	rs1402511
Chromosome Location	chr8:119616023-119616024
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1543223	0.86[AFR][1000 genomes]
rs1818749	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2460969	0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2460980	0.86[AFR][1000 genomes]
rs2514599	0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2514613	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891413	chr8:119607281-119679668	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119600600-119622600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:119605800-119631800	Weak transcription	Fetal Intestine Small	intestine
3	chr8:119609200-119633000	Weak transcription	Gastric	stomach
4	chr8:119609400-119633600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:119610000-119622000	Weak transcription	Lung	lung
6	chr8:119610400-119626600	Weak transcription	Brain Anterior Caudate	brain
7	chr8:119611400-119618800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:119614400-119618600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:119614400-119621400	Weak transcription	Brain Substantia Nigra	brain
10	chr8:119614600-119618800	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:119614600-119619000	Weak transcription	Brain Angular Gyrus	brain
12	chr8:119614600-119626600	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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