Variant report

Variant	rs140307162
Chromosome Location	chr5:15503074-15503075
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv965544	chr5:15502274-15507654	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15501600-15512000	Weak transcription	Small Intestine	intestine
2	chr5:15501800-15503200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:15501800-15511000	Weak transcription	Lung	lung
4	chr5:15501800-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:15502000-15505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:15502000-15511600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:15502000-15515000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:15502000-15522200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:15502200-15503200	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:15502400-15509200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:15502600-15503200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:15502600-15503200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:15502600-15503200	Enhancers	Colon Smooth Muscle	Colon
14	chr5:15502600-15503200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:15502600-15503400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:15502600-15503600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:15502600-15510800	Weak transcription	Aorta	Aorta
18	chr5:15502600-15522400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:15502800-15503200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:15502800-15503200	Enhancers	HSMM	muscle
22	chr5:15502800-15503400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr5:15502800-15503400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:15502800-15503400	Flanking Active TSS	Fetal Heart	heart
25	chr5:15502800-15503400	Enhancers	Fetal Lung	lung
26	chr5:15502800-15503600	Weak transcription	Brain Anterior Caudate	brain
27	chr5:15502800-15503600	Enhancers	Left Ventricle	heart
28	chr5:15502800-15503600	Weak transcription	Dnd41	blood
29	chr5:15502800-15503800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:15502800-15503800	Enhancers	Brain Hippocampus Middle	brain
31	chr5:15502800-15504200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr5:15502800-15504400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:15502800-15505200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:15502800-15506200	Weak transcription	Fetal Kidney	kidney
35	chr5:15502800-15506800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr5:15502800-15507000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr5:15502800-15509800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:15502800-15510600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr5:15502800-15513600	Weak transcription	Right Ventricle	heart
40	chr5:15502800-15514600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:15502800-15521400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr5:15503000-15503200	Weak transcription	Right Atrium	heart
43	chr5:15503000-15503200	Active TSS	HSMMtube	muscle
44	chr5:15503000-15503600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr5:15503000-15503600	Weak transcription	Fetal Muscle Leg	muscle
46	chr5:15503000-15503600	Genic enhancers	Fetal Stomach	stomach
47	chr5:15503000-15503800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:15503000-15503800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:15503000-15503800	Enhancers	HUVEC	blood vessel
50	chr5:15503000-15504000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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