Variant report

Variant	rs1403592
Chromosome Location	chr8:3856228-3856229
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12674864	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap]
rs12675202	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12675311	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs12677415	0.87[CHB][hapmap];0.92[CHD][hapmap]
rs12680867	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12682541	1.00[CEU][hapmap]
rs17063183	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17063188	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.86[MEX][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17068473	0.82[MKK][hapmap]
rs17068507	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17068510	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs17068516	1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17068527	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17068532	1.00[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap]
rs17068538	1.00[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[MEX][hapmap]
rs17068542	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs17068550	0.93[CHB][hapmap];0.84[CHD][hapmap];1.00[MEX][hapmap]
rs17068605	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs17068619	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs17068622	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs17330743	0.87[CHB][hapmap]
rs17330757	0.81[CHB][hapmap]
rs17574215	0.82[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55824939	0.93[ASN][1000 genomes]
rs56041615	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56183360	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56367676	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58639311	0.85[AMR][1000 genomes]
rs67030745	0.89[ASN][1000 genomes]
rs68001273	0.85[ASN][1000 genomes]
rs7000915	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7013771	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73182011	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1025204	chr8:3542586-3889592	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv539356	chr8:3542586-3889592	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv949269	chr8:3556145-4246903	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv1034837	chr8:3623613-3880459	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv932135	chr8:3636535-3909039	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv530863	chr8:3710810-4381378	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1016688	chr8:3754417-4003761	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv539364	chr8:3754417-4003761	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv931000	chr8:3791727-4088167	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv831212	chr8:3793931-3986154	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv889924	chr8:3828138-4180844	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1024308	chr8:3854987-3988435	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1016303	chr8:3855096-3875391	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:3846200-3857400	Weak transcription	Pancreas	Pancrea
2	chr8:3852600-3862800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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