Variant report

Variant	rs140359662
Chromosome Location	chr6:82460935-82460936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82442487..82447325-chr6:82460557..82464499,4	MCF-7	breast:
2	chr6:82458586..82464036-chr6:82521971..82527096,10	MCF-7	breast:
3	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219702	Chromatin interaction
ENSG00000206886	Chromatin interaction
ENSG00000232031	Chromatin interaction
ENSG00000224995	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3387792	chr6:82460658-82463206	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82455200-82464000	Active TSS	Right Ventricle	heart
2	chr6:82456000-82461000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:82456400-82464000	Active TSS	Right Atrium	heart
4	chr6:82458400-82464600	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr6:82458600-82461400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:82458600-82461600	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:82458600-82461600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:82458600-82461600	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr6:82458600-82463800	Active TSS	Stomach Smooth Muscle	stomach
10	chr6:82458800-82461600	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr6:82458800-82463800	Active TSS	Brain Anterior Caudate	brain
12	chr6:82458800-82463800	Active TSS	Colon Smooth Muscle	Colon
13	chr6:82459000-82463400	Active TSS	Colonic Mucosa	Colon
14	chr6:82459000-82464400	Active TSS	Stomach Mucosa	stomach
15	chr6:82459200-82464600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr6:82459400-82461400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr6:82459400-82461400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:82459400-82463800	Active TSS	Lung	lung
19	chr6:82459600-82461000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:82459600-82461800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:82459600-82463800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:82459600-82464000	Active TSS	Rectal Smooth Muscle	rectum
23	chr6:82459800-82461200	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:82459800-82461400	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr6:82459800-82462800	Bivalent/Poised TSS	Thymus	Thymus
26	chr6:82459800-82463800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:82459800-82463800	Active TSS	Aorta	Aorta
28	chr6:82459800-82463800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:82459800-82463800	Active TSS	Brain Substantia Nigra	brain
30	chr6:82459800-82464000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr6:82459800-82464200	Active TSS	Placenta Amnion	Placenta Amnion
32	chr6:82459800-82464200	Active TSS	HSMM	muscle
33	chr6:82459800-82464200	Active TSS	NHLF	lung
34	chr6:82460000-82461000	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr6:82460000-82461000	Active TSS	Fetal Muscle Trunk	muscle
36	chr6:82460000-82461000	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
37	chr6:82460000-82461200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:82460000-82461200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:82460000-82461200	Active TSS	Fetal Stomach	stomach
40	chr6:82460000-82461200	Active TSS	HepG2	liver
41	chr6:82460000-82461400	Bivalent/Poised TSS	GM12878-XiMat	blood
42	chr6:82460000-82462000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:82460000-82463400	Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:82460000-82463400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:82460000-82463400	Active TSS	Placenta	Placenta
46	chr6:82460000-82463400	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:82460000-82463400	Active TSS	NH-A	brain
48	chr6:82460000-82463600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:82460000-82463600	Active TSS	Duodenum Mucosa	Duodenum
50	chr6:82460000-82463600	Active TSS	Fetal Intestine Small	intestine

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