Variant report

Variant	rs140365925
Chromosome Location	chr2:19987138-19987139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:19983582..19988390-chr2:19994942..20000184,6	MCF-7	breast:
2	chr2:19984950..19987899-chr2:19994485..19997173,2	K562	blood:
3	chr2:19986165..19988032-chr2:20101157..20102793,2	K562	blood:

Variant related genes	Relation type
ENSG00000271991	Chromatin interaction
ENSG00000183891	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873710	chr2:19908539-20026319	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv873711	chr2:19950864-20073860	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv873712	chr2:19955245-20131079	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv873713	chr2:19955245-20144372	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv581154	chr2:19974697-19995470	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1847856	chr2:19983563-19989402	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1850703	chr2:19983563-20011972	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3460873	chr2:19987105-19987995	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:19984200-19987800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:19984600-19987800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:19984800-19987200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:19984800-19987200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:19985200-19987200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:19985200-19987200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:19985200-19987200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:19985200-19990200	Weak transcription	Right Atrium	heart
9	chr2:19985400-19987200	Enhancers	NHLF	lung
10	chr2:19985400-19987400	Enhancers	HSMM	muscle
11	chr2:19985400-19987800	Enhancers	A549	lung
12	chr2:19985600-19987400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:19985800-19987200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr2:19985800-19987200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr2:19985800-19987600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:19986000-19987800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr2:19986000-19988000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr2:19986200-19987200	Enhancers	Placenta	Placenta
19	chr2:19986400-19987600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:19986400-19987600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr2:19986600-19987200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:19986600-19987400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:19986800-19987600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr2:19986800-19987600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:19986800-19987600	Enhancers	K562	blood
26	chr2:19986800-20001800	Weak transcription	Aorta	Aorta
27	chr2:19987000-19988000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr2:19987000-19988000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr2:19987000-19989800	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links