Variant report

Variant	rs140382207
Chromosome Location	chr6:142762436-142762437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3429097	chr6:142762259-142765357	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142718000-142763200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:142735200-142765400	Weak transcription	Hela-S3	cervix
3	chr6:142735800-142765400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:142737600-142765600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:142737800-142765800	Weak transcription	Fetal Brain Male	brain
6	chr6:142738000-142774200	Weak transcription	NHEK	skin
7	chr6:142739000-142764800	Weak transcription	NHLF	lung
8	chr6:142743200-142769200	Weak transcription	HMEC	breast
9	chr6:142748000-142782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:142749200-142764600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:142750000-142766000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:142751600-142780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:142752400-142774600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:142753600-142774000	Strong transcription	Liver	Liver
15	chr6:142754000-142772800	Strong transcription	HepG2	liver
16	chr6:142755200-142765800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:142755200-142766000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:142756400-142764400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:142757200-142765400	Weak transcription	Fetal Intestine Large	intestine
20	chr6:142757200-142765400	Weak transcription	Fetal Stomach	stomach
21	chr6:142758400-142762800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:142758600-142762600	Strong transcription	Placenta	Placenta
23	chr6:142758600-142763200	Strong transcription	A549	lung
24	chr6:142760000-142770600	Weak transcription	Lung	lung
25	chr6:142760400-142767800	Weak transcription	Esophagus	oesophagus
26	chr6:142760600-142765400	Weak transcription	HSMM	muscle
27	chr6:142760600-142765800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:142760800-142765400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:142761600-142763200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr6:142761600-142763200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:142761600-142763200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr6:142761800-142762600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr6:142761800-142762800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr6:142761800-142763200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:142761800-142763200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:142761800-142763200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:142761800-142763400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr6:142762000-142762600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr6:142762000-142765400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:142762200-142763200	Enhancers	H9 Cell Line	embryonic stem cell
41	chr6:142762200-142763200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:142762200-142763200	Genic enhancers	Fetal Lung	lung
43	chr6:142762200-142764200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:142762200-142765400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:142762200-142773000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:142762400-142762600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr6:142762400-142764000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:142762400-142766000	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links