Variant report

Variant	rs140389774
Chromosome Location	chr4:120726349-120726350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:120726348-120726703	IMR90	lung:	n/a	chr4:120726519-120726530

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:120726319-120726369	AG09319	gingival:	n/a
2	chr4:120726319-120726369	HCM	heart:	n/a
3	chr4:120726319-120726369	AG04449	skin:	fetal
4	chr4:120726319-120726369	ECC-1	luminal epithelium:	n/a
5	chr4:120726319-120726369	ovcar-3	ovarian:	n/a
6	chr4:120726319-120726369	CMK	blood:	n/a
7	chr4:120726319-120726369	IMR90	lung:	fetal
8	chr4:120726319-120726369	NB4	blood:	n/a
9	chr4:120726319-120726369	ProgFib	skin:	n/a
10	chr4:120726319-120726369	SKMC	muscle:	n/a
11	chr4:120726319-120726369	SK-N-SH	brain:	n/a
12	chr4:120726319-120726369	HepG2	liver:	n/a
13	chr4:120726319-120726369	GM12878	blood:	n/a
14	chr4:120726319-120726369	AoSMC	blood vessel:	n/a
15	chr4:120726319-120726369	AG10803	skin:	n/a
16	chr4:120726319-120726369	NH-A	brain:	n/a
17	chr4:120726319-120726369	HRE	kidney:	n/a
18	chr4:120726319-120726369	HRCEpiC	kidney:	n/a
19	chr4:120726319-120726369	NHDF-neo	bronchial:	n/a
20	chr4:120726319-120726369	GM12892	blood:	n/a
21	chr4:120726319-120726369	HCPEpiC	choroid plexus:	n/a
22	chr4:120726319-120726369	AG04450	lung:	fetal
23	chr4:120726319-120726369	MCF-7	breast:	n/a
24	chr4:120726319-120726369	HEK293	kidney:	embryo
25	chr4:120726319-120726369	NT2-D1	testis:	n/a
26	chr4:120726319-120726369	GM12891	blood:	n/a
27	chr4:120726319-120726369	HEEpiC	esophagus:	n/a
28	chr4:120726319-120726369	SK-N-MC	brain:	n/a
29	chr4:120726319-120726369	Hepatocyte	liver:	n/a
30	chr4:120726319-120726369	PrEC	prostate:	n/a
31	chr4:120726319-120726369	H1-hESC	embryonic stem cell:	embryo
32	chr4:120726319-120726369	RPTEC	kidney:	n/a
33	chr4:120726319-120726369	U87	brain:	n/a
34	chr4:120726319-120726369	Caco-2	colon:	n/a
35	chr4:120726319-120726369	BE2_C	brain:	n/a
36	chr4:120726319-120726369	HMEC	breast:	n/a
37	chr4:120726319-120726369	PANC-1	pancreas:	n/a
38	chr4:120726319-120726369	Hela-S3	cervix:	n/a
39	chr4:120726319-120726369	K562	blood:	n/a
40	chr4:120726319-120726369	HCF	heart:	n/a
41	chr4:120726319-120726369	HRPEpiC	eye:	n/a
42	chr4:120726319-120726369	BJ	skin:	n/a
43	chr4:120726319-120726369	SAEC	small airway:	n/a
44	chr4:120726319-120726369	Jurkat	blood:	n/a
45	chr4:120726319-120726369	HPAEpiC	pulmonary alveolar:	n/a
46	chr4:120726319-120726369	HNPCEpiC	eye:	n/a
47	chr4:120726319-120726369	GM06990	blood:	n/a
48	chr4:120726319-120726369	PFSK-1	brain:	n/a
49	chr4:120726319-120726369	HUVEC	blood vessel:	n/a
50	chr4:120726319-120726369	HCT-116	colon:	n/a

No data

Variant related genes	Relation type
ENSG00000250772	TF binding region
ENSG00000250772	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv3443538	chr4:120725398-120755486	Weak transcription Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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