Variant report

Variant	rs140393204
Chromosome Location	chr10:116580256-116580257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116567584..116574580-chr10:116575101..116583231,11	MCF-7	breast:
2	chr10:116579148..116581126-chr10:116581176..116582786,3	MCF-7	breast:
3	chr10:116575494..116578184-chr10:116579422..116580946,2	K562	blood:
4	chr10:116577691..116581134-chr10:116581459..116583772,3	MCF-7	breast:
5	chr10:116564843..116568193-chr10:116577870..116580490,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215760	Chromatin interaction
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv518081	chr10:116576189-116582502	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3338822	chr10:116579462-116583960	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116569800-116580600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:116571000-116580600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:116572200-116580600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116572200-116580800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:116576000-116581000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:116576000-116581000	Weak transcription	NHDF-Ad	bronchial
7	chr10:116576200-116581000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:116578800-116580600	Enhancers	Hela-S3	cervix
9	chr10:116579000-116580600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr10:116579000-116580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:116579200-116580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:116579400-116580600	Weak transcription	A549	lung
13	chr10:116579400-116580600	Weak transcription	NH-A	brain
14	chr10:116579400-116581000	Enhancers	Liver	Liver
15	chr10:116579400-116583600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:116579600-116580600	Weak transcription	GM12878-XiMat	blood
17	chr10:116579600-116581000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:116579800-116580600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr10:116579800-116580600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:116579800-116580800	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:116579800-116583600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:116580000-116580600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:116580000-116580600	Enhancers	Adipose Nuclei	Adipose
24	chr10:116580200-116580600	Active TSS	Osteobl	bone
25	chr10:116580200-116582200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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