Variant report

Variant	rs140401546
Chromosome Location	chr6:29572279-29572280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29571256..29575251-chr6:29575309..29583536,9	K562	blood:
2	chr6:29564780..29575712-chr6:29592511..29597522,14	K562	blood:
3	chr6:29566358..29568865-chr6:29570413..29572313,3	K562	blood:
4	chr6:29566782..29572750-chr6:29592808..29598864,8	K562	blood:

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv528285	chr6:29566842-29588146	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv462671	chr6:29566842-29588146	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv601229	chr6:29566842-29588146	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv526617	chr6:29571545-29576393	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29561800-29573200	Weak transcription	HSMMtube	muscle
2	chr6:29562000-29572600	Weak transcription	Fetal Heart	heart
3	chr6:29566400-29595200	Weak transcription	Right Atrium	heart
4	chr6:29566600-29587000	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:29566800-29572400	Weak transcription	HUVEC	blood vessel
6	chr6:29566800-29584600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:29566800-29590000	Strong transcription	H9 Cell Line	embryonic stem cell
8	chr6:29566800-29590600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:29567000-29589800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:29567200-29589400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:29567200-29589800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:29567600-29574600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:29567600-29583800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:29567600-29592400	Strong transcription	Fetal Stomach	stomach
15	chr6:29567600-29595400	Weak transcription	A549	lung
16	chr6:29567800-29582800	Strong transcription	Ovary	ovary
17	chr6:29567800-29584600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:29568000-29574600	Weak transcription	HSMM	muscle
19	chr6:29568200-29572800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:29568400-29572400	Weak transcription	Dnd41	blood
21	chr6:29568400-29582600	Strong transcription	HMEC	breast
22	chr6:29568400-29583600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:29568600-29595200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr6:29568800-29578000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:29568800-29583200	Strong transcription	NHEK	skin
26	chr6:29569000-29582600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr6:29569000-29582800	Strong transcription	Osteobl	bone
28	chr6:29569000-29584600	Strong transcription	Spleen	Spleen
29	chr6:29569000-29592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:29569200-29572600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:29569200-29582800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:29569200-29592200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:29569400-29581600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:29569400-29581600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:29569400-29582400	Strong transcription	Fetal Lung	lung
36	chr6:29569400-29592000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr6:29569400-29595600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:29569600-29581800	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr6:29569600-29582400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:29569800-29583000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:29569800-29583200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr6:29570000-29572800	Strong transcription	Brain Hippocampus Middle	brain
43	chr6:29570000-29573200	Strong transcription	Brain Substantia Nigra	brain
44	chr6:29570000-29576200	Strong transcription	Rectal Smooth Muscle	rectum
45	chr6:29570000-29577400	Strong transcription	NHLF	lung
46	chr6:29570000-29581600	Strong transcription	Lung	lung
47	chr6:29570000-29582600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr6:29570200-29575600	Weak transcription	Fetal Intestine Large	intestine
49	chr6:29570200-29575800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:29570200-29576400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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