Variant report

Variant	rs140406067
Chromosome Location	chr4:119756169-119756170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:119755459..119757778-chr4:120132797..120135484,2	K562	blood:
2	chr4:119689368..119690979-chr4:119755279..119757567,2	MCF-7	breast:
3	chr4:119755941..119757728-chr4:119758590..119760561,2	MCF-7	breast:
4	chr4:119751011..119752990-chr4:119754858..119757253,2	K562	blood:
5	chr4:119744784..119747209-chr4:119754094..119757158,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145390	Chromatin interaction
ENSG00000178636	Chromatin interaction
ENSG00000150961	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv3355840	chr4:119296640-119774737	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv516777	chr4:119733366-119762951	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3377040	chr4:119756129-119758677	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119719000-119756200	Weak transcription	Fetal Brain Male	brain
2	chr4:119735600-119756200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:119736400-119756200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:119736800-119756200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:119736800-119756200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:119736800-119756200	Weak transcription	Brain Substantia Nigra	brain
7	chr4:119748600-119756200	Weak transcription	Psoas Muscle	Psoas
8	chr4:119749000-119756200	Weak transcription	Esophagus	oesophagus
9	chr4:119751600-119756200	Weak transcription	Fetal Brain Female	brain
10	chr4:119753600-119756200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:119754200-119756200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:119754200-119756400	Weak transcription	Spleen	Spleen
13	chr4:119754200-119757400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:119754800-119756200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:119754800-119756200	Weak transcription	Gastric	stomach
16	chr4:119754800-119756200	Weak transcription	Lung	lung
17	chr4:119754800-119756200	Weak transcription	Ovary	ovary
18	chr4:119754800-119756200	Weak transcription	Pancreas	Pancrea
19	chr4:119754800-119756200	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr4:119755000-119756200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:119755000-119756200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:119755000-119756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:119755000-119757800	Active TSS	NHLF	lung
24	chr4:119755000-119758200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr4:119755200-119756200	Weak transcription	Small Intestine	intestine
26	chr4:119755200-119756200	Enhancers	Stomach Mucosa	stomach
27	chr4:119755200-119758200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:119755200-119758200	Active TSS	Aorta	Aorta
29	chr4:119755400-119756200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr4:119755400-119756200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr4:119755400-119756200	Enhancers	Fetal Lung	lung
32	chr4:119755400-119756200	Weak transcription	Left Ventricle	heart
33	chr4:119755400-119756800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:119755400-119757800	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr4:119755400-119757800	Active TSS	NH-A	brain
36	chr4:119755400-119758000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:119755400-119758200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr4:119755400-119758200	Active TSS	HSMMtube	muscle
39	chr4:119755400-119758400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:119755600-119756200	Flanking Active TSS	Colon Smooth Muscle	Colon
41	chr4:119755600-119757800	Active TSS	GM12878-XiMat	blood
42	chr4:119755600-119757800	Active TSS	Osteobl	bone
43	chr4:119755600-119758000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:119755600-119758000	Active TSS	NHDF-Ad	bronchial
45	chr4:119755600-119758400	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr4:119755600-119758400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr4:119755800-119756200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr4:119755800-119756200	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr4:119755800-119756200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr4:119755800-119756200	Enhancers	Fetal Heart	heart

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