Variant report

Variant	rs140425549
Chromosome Location	chr9:107950519-107950520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:20)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:20 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr9:107949874-107950620	A549	lung:	n/a	n/a
2	FOSL2	chr9:107949823-107950585	A549	lung:	n/a	n/a
3	TCF12	chr9:107950003-107950551	SK-N-SH	brain:	n/a	n/a
4	FOXA2	chr9:107950086-107950857	A549	lung:	n/a	n/a
5	MAX	chr9:107949881-107950541	A549	lung:	n/a	n/a
6	MAX	chr9:107949987-107950530	A549	lung:	n/a	n/a
7	NFIC	chr9:107950004-107950530	SK-N-SH	brain:	n/a	n/a
8	CEBPB	chr9:107950001-107950526	A549	lung:	n/a	n/a
9	CEBPB	chr9:107949972-107950541	MCF-7	breast:	n/a	n/a
10	BCL3	chr9:107949887-107950563	A549	lung:	n/a	n/a
11	SP1	chr9:107949855-107950558	A549	lung:	n/a	n/a
12	TCF12	chr9:107949844-107950730	A549	lung:	n/a	n/a
13	JUND	chr9:107949926-107950530	SK-N-SH	brain:	n/a	chr9:107950250-107950261
14	EP300	chr9:107949977-107950552	SK-N-SH	brain:	n/a	n/a
15	JUND	chr9:107950079-107950539	A549	lung:	n/a	chr9:107950250-107950261
16	CEBPB	chr9:107949851-107950540	A549	lung:	n/a	n/a
17	GATA3	chr9:107949865-107950578	A549	lung:	n/a	n/a
18	RXRA	chr9:107949978-107950539	SK-N-SH	brain:	n/a	n/a
19	FOSL2	chr9:107950002-107950566	SK-N-SH	brain:	n/a	n/a
20	SP1	chr9:107949840-107950580	A549	lung:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:107949926..107956747-chr9:108004908..108009966,10	MCF-7	breast:
2	chr9:107948857..107951560-chr9:108005097..108008240,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000238208	TF binding region
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1045079	chr9:107938039-107975595	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1043466	chr9:107950174-108001988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107949000-107951200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:107949400-107950800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:107949600-107951400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:107949600-107958200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:107949800-107950600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:107949800-107950600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:107949800-107950800	Enhancers	NHDF-Ad	bronchial
8	chr9:107949800-107950800	Enhancers	Osteobl	bone
9	chr9:107949800-107951000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:107949800-107951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:107949800-107951200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:107949800-107952400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr9:107950000-107950600	Enhancers	HSMM	muscle
14	chr9:107950000-107951200	Enhancers	Hela-S3	cervix
15	chr9:107950200-107950800	Enhancers	Liver	Liver
16	chr9:107950200-107951400	Enhancers	Stomach Mucosa	stomach
17	chr9:107950200-107951600	Enhancers	A549	lung
18	chr9:107950400-107952800	Weak transcription	HepG2	liver

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