Variant report

Variant	rs140431654
Chromosome Location	chr4:57773041-57773042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:57772889-57773155	HepG2	liver:	n/a	n/a
2	ZNF143	chr4:57773032-57773971	H1-hESC	embryonic stem cell:	n/a	n/a
3	CEBPB	chr4:57772923-57773298	H1-hESC	embryonic stem cell:	n/a	n/a
4	CEBPB	chr4:57772840-57773146	K562	blood:	n/a	n/a
5	CEBPB	chr4:57772842-57773384	K562	blood:	n/a	n/a
6	CEBPB	chr4:57772879-57773119	Hela-S3	cervix:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:57772988..57775343-chr4:57776220..57778579,3	MCF-7	breast:
2	chr4:57772839..57777394-chr4:57841397..57848240,17	K562	blood:
3	chr4:57771688..57776264-chr4:57841866..57845328,7	MCF-7	breast:
4	chr4:57771524..57779492-chr4:57841270..57849741,26	K562	blood:

No data

Variant related genes	Relation type
REST	TF binding region
ENSG00000047315	Chromatin interaction
ENSG00000084092	Chromatin interaction
ENSG00000084093	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv822562	chr4:57768655-57779715	Active TSS Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv12676	chr4:57772270-57775584	Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57771800-57773200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:57772000-57773400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:57772200-57773200	Enhancers	Primary B cells from cord blood	blood
4	chr4:57772600-57773200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr4:57772600-57773200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
6	chr4:57772600-57773200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:57772600-57773200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:57772600-57773200	Enhancers	Adipose Nuclei	Adipose
9	chr4:57772600-57773200	Enhancers	Brain Hippocampus Middle	brain
10	chr4:57772600-57773200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr4:57772600-57773200	Enhancers	Fetal Thymus	thymus
12	chr4:57772600-57773200	Enhancers	Stomach Mucosa	stomach
13	chr4:57772600-57773200	Enhancers	Dnd41	blood
14	chr4:57772600-57773200	Bivalent Enhancer	K562	blood
15	chr4:57772600-57773400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr4:57772600-57773600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
17	chr4:57772800-57773200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
18	chr4:57772800-57773200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:57772800-57773200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
20	chr4:57772800-57773200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:57772800-57773200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:57772800-57773200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:57772800-57773200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:57772800-57773200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:57772800-57773200	Enhancers	Brain Angular Gyrus	brain
26	chr4:57772800-57773200	Enhancers	Fetal Intestine Large	intestine
27	chr4:57772800-57773200	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr4:57772800-57773200	Enhancers	Small Intestine	intestine
29	chr4:57772800-57773400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr4:57772800-57773400	Enhancers	Primary B cells from peripheral blood	blood
31	chr4:57772800-57773400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr4:57772800-57773600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
33	chr4:57772800-57773800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr4:57772800-57773800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr4:57772800-57776200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:57773000-57773200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:57773000-57773200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:57773000-57773200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr4:57773000-57773200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:57773000-57773200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr4:57773000-57773200	Enhancers	Primary T cells fromperipheralblood	blood
42	chr4:57773000-57773200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr4:57773000-57773200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr4:57773000-57773200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:57773000-57773200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:57773000-57773200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr4:57773000-57773200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:57773000-57773200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:57773000-57773200	Enhancers	Liver	Liver
50	chr4:57773000-57773200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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