Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10804635	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs1159404	0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs11712935	0.94[JPT][hapmap]
rs12636613	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs12636659	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs13063564	0.85[JPT][hapmap]
rs13076510	0.86[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.89[ASN][1000 genomes]
rs1392918	0.88[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1501205	0.88[CHD][hapmap];0.90[JPT][hapmap]
rs1501207	0.90[JPT][hapmap]
rs16842632	0.83[CHD][hapmap]
rs2270882	0.91[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2291989	0.86[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3772638	0.86[CHD][hapmap];0.90[JPT][hapmap]
rs3772640	0.90[JPT][hapmap]
rs3772647	0.91[CHD][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3772648	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs3821503	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7372088	0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7373413	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7620133	0.86[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7642038	0.86[CHD][hapmap];0.90[JPT][hapmap]
rs9845406	0.85[JPT][hapmap]
rs9883173	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv829731	chr3:134711713-134885064	Strong transcription Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134809200-134855200	Weak transcription	GM12878-XiMat	blood
2	chr3:134823000-134880000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:134842200-134853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:134847400-134849000	Weak transcription	Brain Germinal Matrix	brain
5	chr3:134847400-134859400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:134847600-134849400	Weak transcription	Fetal Brain Male	brain
7	chr3:134848400-134851000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:134848800-134851000	Enhancers	Fetal Brain Female	brain

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