Variant report

Variant	rs1404930
Chromosome Location	chr7:13584674-13584675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10215820	1.00[EUR][1000 genomes]
rs10240740	1.00[EUR][1000 genomes]
rs10950474	1.00[EUR][1000 genomes]
rs10950479	1.00[EUR][1000 genomes]
rs10950480	1.00[EUR][1000 genomes]
rs10950481	1.00[EUR][1000 genomes]
rs10950482	1.00[EUR][1000 genomes]
rs3951219	1.00[EUR][1000 genomes]
rs4027267	1.00[EUR][1000 genomes]
rs4027270	1.00[EUR][1000 genomes]
rs6973023	1.00[EUR][1000 genomes]
rs7788326	1.00[EUR][1000 genomes]
rs965349	1.00[EUR][1000 genomes]
rs994393	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13584600-13586400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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