Variant report

Variant	rs140502133
Chromosome Location	chr6:37850902-37850903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37848628..37851263-chr6:37853706..37855828,2	K562	blood:
2	chr6:37835143..37837500-chr6:37850696..37852776,2	MCF-7	breast:
3	chr6:37835497..37837699-chr6:37850167..37852091,2	MCF-7	breast:
4	chr6:37850219..37851991-chr6:37857089..37858894,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv3472486	chr6:37849274-37853972	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3528238	chr6:37850074-37853672	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3528241	chr6:37850474-37853622	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3472488	chr6:37850807-37852898	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37836400-37861800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:37837200-37856000	Weak transcription	NHEK	skin
3	chr6:37840200-37855400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:37840400-37860000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:37840600-37861800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:37841200-37852200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:37841600-37862400	Weak transcription	Fetal Lung	lung
8	chr6:37845400-37851600	Weak transcription	Fetal Heart	heart
9	chr6:37846000-37857000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:37846000-37865200	Weak transcription	Thymus	Thymus
11	chr6:37846400-37857000	Weak transcription	Right Atrium	heart
12	chr6:37846400-37859600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:37846600-37856800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:37846800-37851600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:37846800-37857000	Weak transcription	Right Ventricle	heart
16	chr6:37848200-37852000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:37848200-37854400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:37848400-37854200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr6:37849000-37851000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:37849000-37851000	Enhancers	Liver	Liver
21	chr6:37849000-37851000	Enhancers	Placenta	Placenta
22	chr6:37849000-37851200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:37849200-37851000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:37849200-37851000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:37849200-37851000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:37849200-37851200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:37849200-37851200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:37849200-37851200	Enhancers	NH-A	brain
29	chr6:37849200-37851800	Enhancers	HepG2	liver
30	chr6:37849200-37856600	Weak transcription	Brain Hippocampus Middle	brain
31	chr6:37849200-37857000	Weak transcription	Brain Anterior Caudate	brain
32	chr6:37849400-37851200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:37849400-37851200	Enhancers	Osteobl	bone
34	chr6:37849400-37853000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:37849400-37854000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:37849400-37856400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:37849600-37851000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:37849600-37851400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:37849600-37854200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:37849800-37851000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:37849800-37851000	Enhancers	HSMM	muscle
42	chr6:37849800-37851200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:37849800-37851200	Enhancers	NHDF-Ad	bronchial
44	chr6:37849800-37851400	Enhancers	Small Intestine	intestine
45	chr6:37850000-37851000	Enhancers	Adipose Nuclei	Adipose
46	chr6:37850000-37851200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:37850000-37851200	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr6:37850000-37857000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:37850200-37851000	Enhancers	Esophagus	oesophagus
50	chr6:37850200-37851200	Enhancers	HMEC	breast

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