Variant report
| Variant | rs1405064 |
|---|---|
| Chromosome Location | chr7:109254958-109254959 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1357690 | 0.82[ASN][1000 genomes] |
| rs1405065 | 0.85[ASN][1000 genomes] |
| rs1524280 | 0.81[ASN][1000 genomes] |
| rs1568778 | 0.82[ASN][1000 genomes] |
| rs1721418 | 0.81[ASN][1000 genomes] |
| rs1721420 | 0.81[ASN][1000 genomes] |
| rs1721452 | 0.82[ASN][1000 genomes] |
| rs1721454 | 0.82[ASN][1000 genomes] |
| rs1721456 | 0.80[ASN][1000 genomes] |
| rs1721941 | 0.81[ASN][1000 genomes] |
| rs1721946 | 0.81[ASN][1000 genomes] |
| rs1721950 | 0.81[ASN][1000 genomes] |
| rs1721951 | 0.81[ASN][1000 genomes] |
| rs1721953 | 0.81[ASN][1000 genomes] |
| rs1916913 | 0.82[ASN][1000 genomes] |
| rs2250798 | 0.85[ASN][1000 genomes] |
| rs2690376 | 0.85[ASN][1000 genomes] |
| rs4730395 | 0.82[ASN][1000 genomes] |
| rs6949142 | 0.82[ASN][1000 genomes] |
| rs7797247 | 0.82[ASN][1000 genomes] |
| rs9640724 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023379 | chr7:109003574-109355234 | Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv608079 | chr7:109098364-109862289 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020761 | chr7:109208187-109275700 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1017184 | chr7:109240101-109350011 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:109240800-109261800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
