Variant report

Variant	rs1405212
Chromosome Location	chr6:117490664-117490665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1852292	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2049529	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2693560	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs509067	0.95[ASN][1000 genomes]
rs544148	0.96[ASN][1000 genomes]
rs560955	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs569691	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902977	0.95[ASN][1000 genomes]
rs6903067	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6903202	0.95[ASN][1000 genomes]
rs6915129	0.95[ASN][1000 genomes]
rs7740152	0.95[ASN][1000 genomes]
rs7749803	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7753558	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs783362	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs961764	0.85[ASN][1000 genomes]
rs998144	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948766	chr6:117407275-117641016	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758076	chr6:117431224-117627275	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759465	chr6:117431224-117627275	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830785	chr6:117448943-117627275	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2757190	chr6:117464048-117609529	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1405212	FAM26F	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117486400-117491200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:117487200-117491200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:117487600-117491000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:117488000-117491400	Enhancers	NHEK	skin
5	chr6:117488000-117491600	Enhancers	HMEC	breast
6	chr6:117488200-117491000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:117489000-117490800	Enhancers	Placenta	Placenta
8	chr6:117489000-117490800	Enhancers	Right Ventricle	heart
9	chr6:117489400-117490800	Flanking Active TSS	HSMMtube	muscle
10	chr6:117489400-117491200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:117489600-117491000	Flanking Active TSS	HSMM	muscle
12	chr6:117490000-117490800	Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:117490400-117490800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr6:117490400-117491000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr6:117490600-117490800	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:117490600-117491400	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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