Variant report

Variant	rs140590017
Chromosome Location	chrX:76972821-76972822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chrX:76972660-76972860	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ATRX	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531129	chrX:76703995-77038914	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3368873	chrX:76731246-77122844	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3367037	chrX:76731346-77001644	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3399586	chrX:76799846-77022144	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3413031	chrX:76808046-76981644	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3443309	chrX:76822346-77048294	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3369442	chrX:76969046-77309072	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:76860400-76974400	Weak transcription	HepG2	liver
2	chrX:76873000-76979400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chrX:76907800-76975000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chrX:76929400-76973600	Weak transcription	NHLF	lung
5	chrX:76938000-76974600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chrX:76944800-76973200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chrX:76946400-76973000	Weak transcription	Fetal Kidney	kidney
8	chrX:76947800-76974200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chrX:76948800-76976400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chrX:76950200-76973000	Weak transcription	Brain Anterior Caudate	brain
11	chrX:76950800-76975200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chrX:76952600-76973000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chrX:76954000-76974200	Weak transcription	A549	lung
14	chrX:76957400-76973600	Weak transcription	Spleen	Spleen
15	chrX:76959800-76973800	Weak transcription	Primary hematopoietic stem cells	blood
16	chrX:76960200-76973000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chrX:76960200-76974400	Weak transcription	Primary B cells from cord blood	blood
18	chrX:76960600-76973400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chrX:76960600-76974200	Weak transcription	Brain Germinal Matrix	brain
20	chrX:76960800-76973200	Weak transcription	Gastric	stomach
21	chrX:76960800-76979400	Weak transcription	Psoas Muscle	Psoas
22	chrX:76961000-76973600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chrX:76961000-76973600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chrX:76961000-76974200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chrX:76961000-76974400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chrX:76961000-76974600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chrX:76961000-76975400	Weak transcription	Fetal Intestine Small	intestine
28	chrX:76961000-76987400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chrX:76961200-76973600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chrX:76961200-76974200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chrX:76961600-76973600	Weak transcription	Adipose Nuclei	Adipose
32	chrX:76963000-76980000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chrX:76964600-76973000	Weak transcription	Osteobl	bone
34	chrX:76965000-76974000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chrX:76965600-76973800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chrX:76970200-76974800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chrX:76971000-76974400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chrX:76971000-76974600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chrX:76971200-76973600	Weak transcription	GM12878-XiMat	blood
40	chrX:76971200-76974200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chrX:76971200-76980400	Weak transcription	Hela-S3	cervix
42	chrX:76971400-76973000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chrX:76971400-76973600	Weak transcription	Liver	Liver
44	chrX:76971400-76973600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chrX:76971400-76973800	Weak transcription	Fetal Thymus	thymus
46	chrX:76971400-76974600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chrX:76971400-76976000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chrX:76971600-76973200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chrX:76971600-76973200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chrX:76971600-76973200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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