Variant report

Variant	rs140616443
Chromosome Location	chr4:85886307-85886308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr4:85886280-85888842	HEK293-T-REx	kidney:	n/a	chr4:85887026-85887035 chr4:85887861-85887882 chr4:85887800-85887821
2	MYC	chr4:85886301-85886634	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:85879778..85882729-chr4:85884440..85887298,2	K562	blood:
2	chr4:85820113..85822349-chr4:85884941..85887197,2	MCF-7	breast:
3	chr4:85503339..85505737-chr4:85885750..85887907,3	MCF-7	breast:
4	chr4:85881229..85883388-chr4:85885235..85887298,2	K562	blood:
5	chr4:85790487..85793474-chr4:85885792..85887497,2	MCF-7	breast:

Variant related genes	Relation type
WDFY3-AS2	TF binding region
ENSG00000163624	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv879516	chr4:85877561-85895436	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3359788	chr4:85885953-85888501	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85865200-85886400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:85872000-85886600	Weak transcription	Lung	lung
3	chr4:85873400-85886600	Weak transcription	Esophagus	oesophagus
4	chr4:85880000-85886600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:85880000-85886600	Weak transcription	Spleen	Spleen
6	chr4:85885200-85886400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:85885200-85886400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:85885200-85886600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
9	chr4:85885200-85886800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr4:85885400-85886400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:85885400-85886400	Enhancers	Duodenum Mucosa	Duodenum
12	chr4:85885400-85886400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:85885400-85886400	Enhancers	Placenta	Placenta
14	chr4:85885400-85886400	Enhancers	Left Ventricle	heart
15	chr4:85885400-85886800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:85885400-85886800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:85885400-85888400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:85885400-85888400	Active TSS	Fetal Kidney	kidney
19	chr4:85885400-85889400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:85885600-85886800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr4:85885800-85886400	Enhancers	Colon Smooth Muscle	Colon
22	chr4:85885800-85886400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr4:85885800-85886400	Flanking Active TSS	HepG2	liver
24	chr4:85885800-85886600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr4:85885800-85886800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:85885800-85886800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:85885800-85886800	Flanking Active TSS	NHEK	skin
28	chr4:85885800-85888400	Active TSS	Brain Anterior Caudate	brain
29	chr4:85885800-85888400	Active TSS	HMEC	breast
30	chr4:85885800-85888600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:85885800-85888600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:85885800-85888600	Active TSS	HSMM	muscle
33	chr4:85885800-85889000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:85885800-85889000	Active TSS	Fetal Brain Female	brain
35	chr4:85885800-85889000	Active TSS	Ovary	ovary
36	chr4:85885800-85889000	Active TSS	Psoas Muscle	Psoas
37	chr4:85886000-85886400	Active TSS	Primary hematopoietic stem cells	blood
38	chr4:85886000-85886400	Active TSS	Adipose Nuclei	Adipose
39	chr4:85886000-85886400	Enhancers	Fetal Stomach	stomach
40	chr4:85886000-85886400	Enhancers	Hela-S3	cervix
41	chr4:85886000-85886600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr4:85886000-85886600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr4:85886000-85886600	Weak transcription	Gastric	stomach
44	chr4:85886000-85886600	Weak transcription	Pancreas	Pancrea
45	chr4:85886000-85886600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:85886000-85886600	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr4:85886000-85886600	Flanking Active TSS	HUVEC	blood vessel
48	chr4:85886000-85886800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr4:85886000-85888400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr4:85886000-85888400	Active TSS	Brain Germinal Matrix	brain

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