Variant report

Variant	rs140616897
Chromosome Location	chr8:87443745-87443746
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:87432419..87434118-chr8:87442366..87444392,2	K562	blood:
2	chr8:87443232..87446931-chr8:87452708..87455402,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	esv3428747	chr8:87442061-87444609	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3441032	chr8:87442336-87444584	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3404419	chr8:87442736-87444284	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:87426000-87446400	Weak transcription	K562	blood
4	chr8:87427400-87452600	Weak transcription	HSMMtube	muscle
5	chr8:87427600-87485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:87428200-87443800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:87428600-87460800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:87429400-87443800	Weak transcription	Brain Angular Gyrus	brain
9	chr8:87429400-87453600	Weak transcription	Stomach Mucosa	stomach
10	chr8:87429800-87443800	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:87429800-87444000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:87431600-87443800	Weak transcription	Colonic Mucosa	Colon
13	chr8:87432400-87443800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:87432600-87451200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:87432800-87443800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:87436400-87451800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:87436800-87451600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr8:87436800-87483200	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr8:87437200-87445600	Strong transcription	Fetal Intestine Large	intestine
20	chr8:87437200-87450400	Strong transcription	Dnd41	blood
21	chr8:87437400-87451400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr8:87437400-87451600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:87437400-87451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:87437400-87451800	Strong transcription	Fetal Lung	lung
25	chr8:87437400-87452200	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr8:87437400-87452600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:87437400-87453000	Strong transcription	Liver	Liver
28	chr8:87437400-87456400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr8:87437400-87457800	Strong transcription	Fetal Thymus	thymus
30	chr8:87437400-87458000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:87437400-87458000	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:87437400-87458200	Strong transcription	Placenta	Placenta
33	chr8:87437400-87482800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:87437600-87448800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:87437600-87451600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:87437600-87452000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr8:87437800-87489600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr8:87438000-87443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr8:87438000-87451600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:87438000-87451800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:87438000-87457800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr8:87438400-87444200	Weak transcription	Fetal Brain Male	brain
43	chr8:87438600-87449400	Strong transcription	Left Ventricle	heart
44	chr8:87438600-87452600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:87438800-87445600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr8:87438800-87446200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:87439000-87443800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr8:87439000-87443800	Weak transcription	Brain Anterior Caudate	brain
49	chr8:87439000-87443800	Weak transcription	Fetal Kidney	kidney
50	chr8:87439000-87443800	Weak transcription	HMEC	breast

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