Variant report

Variant	rs140655960
Chromosome Location	chr13:30598866-30598867
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3410550	chr13:30598652-30602150	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30592000-30599400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr13:30592200-30600600	Weak transcription	Right Atrium	heart
3	chr13:30593000-30599000	Weak transcription	Brain Anterior Caudate	brain
4	chr13:30593200-30606600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:30593800-30600000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:30594400-30599000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:30594600-30599200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:30595200-30612000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:30595400-30599600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:30595600-30599200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:30595800-30599200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:30595800-30599400	Weak transcription	NHLF	lung
13	chr13:30595800-30600000	Weak transcription	HSMM	muscle
14	chr13:30596000-30599400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:30596000-30600000	Weak transcription	HSMMtube	muscle
16	chr13:30596200-30599400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr13:30596400-30599000	Enhancers	Placenta	Placenta
18	chr13:30596400-30599200	Weak transcription	Osteobl	bone
19	chr13:30597200-30599200	Weak transcription	NHDF-Ad	bronchial
20	chr13:30597600-30600600	Weak transcription	Fetal Intestine Large	intestine
21	chr13:30598200-30600400	Weak transcription	HepG2	liver
22	chr13:30598200-30600600	Weak transcription	Fetal Intestine Small	intestine
23	chr13:30598600-30601000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:30598600-30605000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:30598800-30599000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr13:30598800-30599000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links