Variant report

Variant	rs1406665
Chromosome Location	chr2:168479374-168479375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10188463	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1147144	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1147147	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147148	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1147149	0.88[ASN][1000 genomes]
rs1147151	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1147155	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11883712	0.95[ASN][1000 genomes]
rs1226901	0.89[ASN][1000 genomes]
rs1226905	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1226907	0.89[ASN][1000 genomes]
rs1431899	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1431900	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1653400	0.87[ASN][1000 genomes]
rs1730684	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1969581	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464038	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4667539	0.94[ASN][1000 genomes]
rs6750406	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv583594	chr2:168461161-168597986	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168476800-168480800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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