Variant report

Variant	rs1406923
Chromosome Location	chr20:13911081-13911082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11696504	1.00[ASN][1000 genomes]
rs11697554	1.00[ASN][1000 genomes]
rs11697708	1.00[ASN][1000 genomes]
rs6033888	1.00[ASN][1000 genomes]
rs6042525	1.00[ASN][1000 genomes]
rs6042548	1.00[ASN][1000 genomes]
rs6042552	1.00[ASN][1000 genomes]
rs6042553	1.00[ASN][1000 genomes]
rs6079309	1.00[ASN][1000 genomes]
rs6079331	1.00[ASN][1000 genomes]
rs73255018	1.00[ASN][1000 genomes]
rs73255080	1.00[ASN][1000 genomes]
rs73269439	1.00[ASN][1000 genomes]
rs73612329	1.00[AMR][1000 genomes]
rs73900790	1.00[ASN][1000 genomes]
rs8118198	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916202	chr20:13421724-14043615	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1066810	chr20:13451869-14432454	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv912689	chr20:13570331-14155881	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1059221	chr20:13589432-13977327	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv531479	chr20:13632491-14434432	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv585437	chr20:13894869-13938789	Flanking Active TSS Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13907000-13911800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr20:13909600-13912600	Enhancers	Fetal Brain Male	brain
3	chr20:13910400-13911200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr20:13910600-13911200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:13910600-13911600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:13910600-13911600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:13910600-13911600	Enhancers	HMEC	breast
8	chr20:13910600-13911600	Enhancers	NHEK	skin
9	chr20:13910800-13911200	Enhancers	NHDF-Ad	bronchial
10	chr20:13910800-13911400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:13910800-13911400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr20:13910800-13911400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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