Variant report

Variant rs1407816
Chromosome Location chr1:59249347-59249348
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59245200-59251400 Active TSS Aorta Aorta
2 chr1:59245600-59250600 Active TSS HMEC breast
3 chr1:59245600-59251000 Active TSS HSMMtube muscle
4 chr1:59245600-59251400 Active TSS Psoas Muscle Psoas
5 chr1:59246000-59251200 Active TSS Liver Liver
6 chr1:59246200-59251600 Active TSS Fetal Kidney kidney
7 chr1:59246400-59251400 Active TSS ES-I3 Cell Line embryonic stem cell
8 chr1:59246600-59251200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
9 chr1:59246600-59251200 Active TSS A549 lung
10 chr1:59246600-59251400 Active TSS Ovary ovary
11 chr1:59246800-59249400 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
12 chr1:59246800-59249600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:59246800-59251000 Active TSS HSMM muscle
14 chr1:59246800-59251200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:59246800-59251400 Active TSS Colon Smooth Muscle Colon
16 chr1:59246800-59252000 Active TSS Duodenum Smooth Muscle Duodenum
17 chr1:59247000-59249400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
18 chr1:59247000-59251200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:59247000-59251200 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:59247000-59251200 Active TSS Brain Angular Gyrus brain
21 chr1:59247000-59251200 Active TSS Brain Anterior Caudate brain
22 chr1:59247000-59251200 Active TSS Brain Hippocampus Middle brain
23 chr1:59247000-59251200 Active TSS Brain Inferior Temporal Lobe brain
24 chr1:59247000-59251200 Active TSS Fetal Heart heart
25 chr1:59247000-59251200 Active TSS Rectal Mucosa Donor 29 rectum
26 chr1:59247000-59251400 Active TSS Brain Substantia Nigra brain
27 chr1:59247200-59251000 Active TSS Fetal Lung lung
28 chr1:59247200-59251000 Active TSS NH-A brain
29 chr1:59247200-59251400 Active TSS Small Intestine intestine
30 chr1:59247400-59249400 Transcr. at gene 5' and 3' Pancreatic Islets Pancreatic Islet
31 chr1:59247400-59249600 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:59247400-59250600 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
33 chr1:59247400-59251000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells short term culture blood
34 chr1:59247400-59251400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
35 chr1:59247800-59249400 Transcr. at gene 5' and 3' Skeletal Muscle Female skeletal muscle
36 chr1:59247800-59249600 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr1:59247800-59251200 Active TSS Hela-S3 cervix
38 chr1:59248000-59249400 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:59248000-59250800 Active TSS Fetal Muscle Trunk muscle
40 chr1:59248000-59251000 Active TSS Primary T killer memory cells from peripheral blood blood
41 chr1:59248000-59251000 Active TSS Fetal Muscle Leg muscle
42 chr1:59248000-59251200 Active TSS Primary T helper naive cells from peripheral blood blood
43 chr1:59248000-59251200 Active TSS Primary T helper memory cells from peripheral blood 1 blood
44 chr1:59248000-59251200 Active TSS Brain Cingulate Gyrus brain
45 chr1:59248000-59251200 Active TSS Fetal Adrenal Gland Adrenal Gland
46 chr1:59248000-59251400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:59248000-59252000 Active TSS Primary T cells from cord blood blood
48 chr1:59248200-59250600 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
49 chr1:59248200-59251200 Active TSS Primary T helper memory cells from peripheral blood 2 blood
50 chr1:59248400-59249400 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood

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