Variant report

Variant	rs140833591
Chromosome Location	chr11:46414750-46414751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46141600..46143492-chr11:46413694..46415670,2	K562	blood:
2	chr11:46414393..46416737-chr11:46429746..46431617,2	K562	blood:
3	chr11:46382758..46384571-chr11:46413597..46415273,2	K562	blood:
4	chr11:46412693..46415235-chr11:46560575..46563535,2	K562	blood:
5	chr11:46369976..46372560-chr11:46412510..46415040,2	K562	blood:
6	chr11:46413333..46415363-chr11:46417315..46419574,2	MCF-7	breast:
7	chr11:46413148..46415878-chr11:46416015..46418632,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000149091	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv825867	chr11:46303184-46425613	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv1811345	chr11:46317062-46438072	Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv554202	chr11:46334239-46469900	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv897316	chr11:46349631-46417815	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
6	nsv897317	chr11:46363411-46417815	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv897318	chr11:46388220-46417815	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
8	nsv897319	chr11:46396479-46417815	Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	nsv309	chr11:46399678-46440503	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv897320	chr11:46399901-46417815	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1050614	chr11:46414720-46496732	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46410800-46415000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:46410800-46415000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:46411000-46414800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:46411400-46414800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr11:46412000-46415000	Enhancers	Lung	lung
6	chr11:46412400-46414800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:46412400-46415000	Active TSS	Brain Angular Gyrus	brain
8	chr11:46412600-46414800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
9	chr11:46412600-46414800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:46412800-46414800	Flanking Active TSS	Primary hematopoietic stem cells	blood
11	chr11:46412800-46414800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:46412800-46415000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:46412800-46415000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:46412800-46415000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr11:46413000-46414800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr11:46413000-46414800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:46413000-46425000	Weak transcription	Fetal Heart	heart
18	chr11:46413200-46414800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:46413200-46414800	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr11:46413200-46414800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr11:46413200-46414800	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr11:46413200-46414800	Enhancers	Small Intestine	intestine
23	chr11:46413200-46415000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:46413400-46414800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:46413400-46414800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:46413400-46414800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr11:46413400-46414800	Flanking Active TSS	Right Ventricle	heart
28	chr11:46413400-46415000	Flanking Bivalent TSS/Enh	Thymus	Thymus
29	chr11:46413600-46414800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:46413600-46414800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:46413600-46414800	Flanking Active TSS	NH-A	brain
32	chr11:46413800-46414800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
33	chr11:46413800-46414800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr11:46413800-46414800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr11:46413800-46414800	Enhancers	GM12878-XiMat	blood
36	chr11:46414000-46414800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
37	chr11:46414000-46414800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:46414000-46414800	Enhancers	Brain Substantia Nigra	brain
39	chr11:46414000-46414800	Flanking Active TSS	Placenta	Placenta
40	chr11:46414000-46414800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:46414000-46414800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
42	chr11:46414000-46415000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:46414000-46415000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
44	chr11:46414000-46415000	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr11:46414000-46415200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
46	chr11:46414200-46414800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:46414200-46414800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
48	chr11:46414200-46414800	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr11:46414200-46414800	Active TSS	Right Atrium	heart
50	chr11:46414200-46415000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links