Variant report

Variant	rs140835393
Chromosome Location	chr10:4289979-4289980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:4288664-4290065	SK-N-SH	brain:	n/a	chr10:4289311-4289322
2	POLR2A	chr10:4288772-4290113	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr10:4289307-4290005	MCF10A-Er-Src	breast:	n/a	n/a
4	FOXM1	chr10:4288703-4290073	SK-N-SH	brain:	n/a	n/a
5	EP300	chr10:4288679-4289994	SK-N-SH	brain:	n/a	chr10:4289856-4289864 chr10:4288827-4288841 chr10:4289446-4289460
6	PBX3	chr10:4288865-4290034	SK-N-SH	brain:	n/a	n/a
7	GATA3	chr10:4288736-4290061	SK-N-SH	brain:	n/a	chr10:4289448-4289458
8	TCF12	chr10:4288680-4290137	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr10:4287970-4290180	IMR90	lung:	n/a	n/a
10	NFIC	chr10:4288737-4290060	SK-N-SH	brain:	n/a	n/a
11	MEF2A	chr10:4288855-4289998	SK-N-SH	brain:	n/a	chr10:4288922-4288931 chr10:4289011-4289032 chr10:4288921-4288932 chr10:4288920-4288931 chr10:4289013-4289027 chr10:4289015-4289026 chr10:4289016-4289025 chr10:4289014-4289025
12	GATA3	chr10:4288589-4290098	SK-N-SH	brain:	n/a	chr10:4289448-4289458
13	PBX3	chr10:4288783-4290065	SK-N-SH	brain:	n/a	n/a
14	TCF12	chr10:4288743-4290017	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
LINC00702	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1051538	chr10:4274395-4291004	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1052378	chr10:4286880-4307024	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3317084	chr10:4288052-4293650	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1800898	chr10:4288645-4291584	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1821878	chr10:4288645-4291584	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1839878	chr10:4288645-4291584	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3346302	chr10:4288902-4292800	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3318195	chr10:4288977-4292925	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv3341959	chr10:4289352-4292700	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv549858	chr10:4289489-4291584	Weak transcription Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
23	nsv8597	chr10:4289599-4292525	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv3311529	chr10:4289675-4291974	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv1799522	chr10:4289738-4291584	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv1821991	chr10:4289738-4291584	Flanking Active TSS Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
27	nsv511452	chr10:4289738-4294071	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv7613	chr10:4289832-4291914	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv3315973	chr10:4289852-4292200	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
30	nsv512139	chr10:4289921-4291859	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
31	esv3320417	chr10:4289933-4291786	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
32	esv3506156	chr10:4289962-4291781	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
33	esv3357483	chr10:4289968-4291786	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
34	nsv825217	chr10:4289974-4291125	Weak transcription Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
35	nsv821193	chr10:4289974-4291825	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
36	nsv825218	chr10:4289974-4291825	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
37	esv3506159	chr10:4289975-4291724	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
38	esv3506158	chr10:4289977-4291714	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4276000-4292200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4285200-4291800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4285600-4296200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:4286000-4290200	Enhancers	HMEC	breast
5	chr10:4286000-4292400	Weak transcription	Right Ventricle	heart
6	chr10:4286000-4294800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:4286800-4296200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:4288000-4290000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4288000-4290000	Enhancers	Hela-S3	cervix
10	chr10:4288000-4290200	Enhancers	NHEK	skin
11	chr10:4288200-4290000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:4288400-4290000	Enhancers	NHLF	lung
13	chr10:4288400-4291000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:4288600-4290000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:4288600-4290000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:4288600-4290600	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:4288600-4291800	Weak transcription	Aorta	Aorta
18	chr10:4288800-4290000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:4288800-4290200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:4289000-4293000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:4289400-4290000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:4289400-4290000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:4289400-4290000	Flanking Active TSS	NHDF-Ad	bronchial
24	chr10:4289400-4290000	Flanking Active TSS	Osteobl	bone
25	chr10:4289400-4290800	Enhancers	Fetal Thymus	thymus
26	chr10:4289400-4301400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:4289600-4290000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:4289600-4290000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr10:4289600-4296400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:4289800-4290000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:4289800-4290000	Enhancers	HSMM	muscle
32	chr10:4289800-4290000	Enhancers	NH-A	brain
33	chr10:4289800-4291600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr10:4289800-4291800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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