Variant report

Variant	rs140840300
Chromosome Location	chr15:59006683-59006684
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59004920..59006793-chr15:59008060..59010372,2	K562	blood:
2	chr15:58963695..58966248-chr15:59005789..59008669,2	K562	blood:
3	chr15:59006673..59008255-chr15:59014528..59016960,2	K562	blood:

Variant related genes	Relation type
ENSG00000270986	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	esv1843037	chr15:59005922-59115159	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
5	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58977200-59007800	Weak transcription	HepG2	liver
2	chr15:58977200-59039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:58982600-59008000	Weak transcription	Fetal Brain Male	brain
4	chr15:58983200-59016600	Weak transcription	Small Intestine	intestine
5	chr15:58986600-59016600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:58987400-59012000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:58987600-59007800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:58989800-59016800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:58990000-59023400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:58991800-59012200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:58992000-59009000	Weak transcription	Placenta	Placenta
12	chr15:58992000-59010800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:58992000-59015800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:58992000-59023000	Weak transcription	Esophagus	oesophagus
15	chr15:58992000-59023800	Weak transcription	Aorta	Aorta
16	chr15:58992200-59008600	Weak transcription	Fetal Lung	lung
17	chr15:58992400-59011600	Weak transcription	HUVEC	blood vessel
18	chr15:58992400-59012000	Weak transcription	Brain Anterior Caudate	brain
19	chr15:58992600-59016600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:58992600-59021000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:58992800-59007200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr15:58992800-59008400	Weak transcription	A549	lung
23	chr15:58993200-59010200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr15:58993200-59010800	Weak transcription	K562	blood
25	chr15:58993400-59010600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:58994400-59012400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:58994400-59016400	Weak transcription	Adipose Nuclei	Adipose
28	chr15:58994800-59007600	Weak transcription	Dnd41	blood
29	chr15:58996000-59016600	Weak transcription	Colonic Mucosa	Colon
30	chr15:58996200-59016800	Weak transcription	Psoas Muscle	Psoas
31	chr15:58996400-59007600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:58996600-59016600	Weak transcription	NHLF	lung
33	chr15:58996600-59016800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:58996800-59010800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr15:58998200-59009400	Weak transcription	Hela-S3	cervix
36	chr15:58998400-59016600	Weak transcription	Osteobl	bone
37	chr15:58998600-59016600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:58998600-59016800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:58999000-59013600	Weak transcription	Right Ventricle	heart
40	chr15:58999000-59023800	Weak transcription	Gastric	stomach
41	chr15:59000200-59008400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:59000600-59012200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:59002400-59016200	Weak transcription	Left Ventricle	heart
44	chr15:59002600-59008600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:59003000-59007400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:59003000-59010000	Strong transcription	HSMM	muscle
47	chr15:59003400-59008800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:59003400-59016400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:59003800-59012400	Strong transcription	Fetal Thymus	thymus
50	chr15:59003800-59016600	Weak transcription	NH-A	brain

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