Variant report

Variant	rs140862057
Chromosome Location	chr3:59756826-59756827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1003387	chr3:59756364-59831340	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:59745200-59757000	Weak transcription	Dnd41	blood
3	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:59750200-59757600	Weak transcription	Esophagus	oesophagus
7	chr3:59752600-59757000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:59752600-59757200	Weak transcription	HSMMtube	muscle
9	chr3:59752800-59757000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:59752800-59757200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:59752800-59757200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:59753400-59757200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:59754400-59757200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr3:59755600-59761400	Enhancers	Fetal Thymus	thymus
15	chr3:59756000-59758000	Weak transcription	GM12878-XiMat	blood
16	chr3:59756200-59760400	Enhancers	Primary hematopoietic stem cells	blood
17	chr3:59756400-59757000	Bivalent Enhancer	Thymus	Thymus
18	chr3:59756400-59758000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr3:59756400-59761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:59756600-59757800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:59756600-59757800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:59756600-59758200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:59756600-59758200	Enhancers	NHDF-Ad	bronchial
24	chr3:59756600-59758800	Enhancers	Osteobl	bone
25	chr3:59756600-59759400	Weak transcription	Fetal Muscle Leg	muscle
26	chr3:59756600-59761200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:59756800-59757000	Weak transcription	Primary T cells from cord blood	blood
28	chr3:59756800-59758200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:59756800-59758600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:59756800-59758800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr3:59756800-59758800	Enhancers	HMEC	breast
32	chr3:59756800-59763600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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