Variant report

Variant	rs140878739
Chromosome Location	chr9:16207525-16207526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:16207216..16210158-chr9:16217890..16219835,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf93-7	chr9:16206806-16209226	ucscGeneNc_uc003zmh_1

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv892640	chr9:16206695-16260837	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:16204600-16213200	Weak transcription	NHLF	lung
4	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16206000-16213600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16206400-16207600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:16206400-16207800	Enhancers	Fetal Thymus	thymus
8	chr9:16207000-16207800	Flanking Active TSS	Dnd41	blood
9	chr9:16207200-16207600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:16207200-16207600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:16207200-16207600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr9:16207200-16207600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:16207200-16207600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:16207200-16207600	Active TSS	Stomach Smooth Muscle	stomach
15	chr9:16207200-16207800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:16207200-16207800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:16207200-16207800	Flanking Active TSS	HSMMtube	muscle
18	chr9:16207200-16207800	Enhancers	HUVEC	blood vessel
19	chr9:16207200-16207800	Enhancers	Osteobl	bone
20	chr9:16207400-16207600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:16207400-16207600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:16207400-16207600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr9:16207400-16207800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:16207400-16207800	Active TSS	Ovary	ovary
25	chr9:16207400-16207800	Active TSS	HSMM	muscle
26	chr9:16207400-16208000	Enhancers	Primary T cells from cord blood	blood
27	chr9:16207400-16213600	Weak transcription	Psoas Muscle	Psoas
28	chr9:16207400-16213600	Weak transcription	Right Atrium	heart
29	chr9:16207400-16214400	Weak transcription	Fetal Kidney	kidney

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