Variant report

Variant	rs140893062
Chromosome Location	chr15:50726497-50726498
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50643521..50646507-chr15:50725022..50727342,2	K562	blood:
2	chr15:50645071..50649193-chr15:50720953..50727690,12	MCF-7	breast:
3	chr15:50716353..50719230-chr15:50725836..50728132,2	K562	blood:
4	chr15:50720179..50722555-chr15:50725678..50727249,2	K562	blood:
5	chr15:50645858..50649453-chr15:50724154..50728653,8	MCF-7	breast:
6	chr15:50722111..50724642-chr15:50725958..50727736,2	K562	blood:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction
ENSG00000138592	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
2	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv904210	chr15:50702058-50786024	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1040717	chr15:50715572-50846521	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
7	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
8	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	esv3435723	chr15:50726264-50726860	Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50717000-50726800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:50717400-50747000	Weak transcription	Aorta	Aorta
3	chr15:50717600-50764600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:50717600-50774800	Weak transcription	Stomach Mucosa	stomach
5	chr15:50717800-50731200	Weak transcription	Fetal Brain Female	brain
6	chr15:50717800-50731200	Weak transcription	Fetal Kidney	kidney
7	chr15:50717800-50731600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:50717800-50731600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr15:50717800-50732000	Weak transcription	Small Intestine	intestine
10	chr15:50717800-50732200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:50717800-50732200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:50717800-50732200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:50717800-50732200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:50717800-50732200	Weak transcription	HSMMtube	muscle
15	chr15:50717800-50732200	Weak transcription	NHLF	lung
16	chr15:50717800-50732400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:50717800-50738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:50717800-50758800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:50718000-50731200	Weak transcription	Brain Anterior Caudate	brain
20	chr15:50718000-50732200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:50718000-50734600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:50718000-50755400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr15:50718000-50757000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:50718200-50730800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr15:50718200-50731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr15:50718200-50731400	Weak transcription	Fetal Thymus	thymus
27	chr15:50718200-50731600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:50718200-50731600	Weak transcription	Fetal Muscle Leg	muscle
29	chr15:50718200-50732200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:50718400-50740400	Weak transcription	Fetal Heart	heart
31	chr15:50718800-50728000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:50718800-50731200	Weak transcription	Adipose Nuclei	Adipose
33	chr15:50718800-50732200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:50718800-50732200	Weak transcription	HUVEC	blood vessel
35	chr15:50719000-50734400	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:50719200-50732200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr15:50719400-50731800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:50719600-50729800	Weak transcription	K562	blood
39	chr15:50719600-50730600	Weak transcription	HSMM	muscle
40	chr15:50719600-50732400	Weak transcription	Brain Angular Gyrus	brain
41	chr15:50719600-50732400	Weak transcription	Fetal Brain Male	brain
42	chr15:50720600-50730400	Weak transcription	Fetal Stomach	stomach
43	chr15:50721200-50732200	Weak transcription	HMEC	breast
44	chr15:50721400-50728000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:50721400-50731600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:50721400-50732200	Weak transcription	Ovary	ovary
47	chr15:50721400-50732600	Weak transcription	GM12878-XiMat	blood
48	chr15:50721800-50732200	Weak transcription	Brain Germinal Matrix	brain
49	chr15:50721800-50732400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr15:50722800-50764600	Weak transcription	Esophagus	oesophagus

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