Variant report

Variant	rs140915428
Chromosome Location	chr10:112564189-112564190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112564097..112567793-chr10:112569786..112571719,3	MCF-7	breast:
2	chr10:112562895..112565323-chr10:112578777..112581369,2	K562	blood:
3	chr10:112562682..112564741-chr10:112566724..112568597,2	K562	blood:
4	chr10:112561819..112564903-chr10:112677078..112679804,3	MCF-7	breast:
5	chr10:112563768..112566237-chr10:112662611..112664819,2	K562	blood:
6	chr10:112563537..112565661-chr10:112631635..112633969,3	MCF-7	breast:
7	chr10:112562735..112565358-chr10:112599409..112602252,2	MCF-7	breast:
8	chr10:112563375..112566130-chr10:112568241..112569894,2	MCF-7	breast:
9	chr10:112563889..112566843-chr10:112632108..112634836,3	MCF-7	breast:
10	chr10:112065247..112068182-chr10:112564136..112566430,2	MCF-7	breast:
11	chr10:112563350..112568484-chr10:112581268..112585698,6	MCF-7	breast:
12	chr10:112562895..112564656-chr10:112578685..112581369,2	K562	blood:
13	chr10:112559443..112561037-chr10:112563760..112565713,2	MCF-7	breast:
14	chr10:112563279..112564533-chr10:112653040..112653982,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000214413	Chromatin interaction
ENSG00000203867	Chromatin interaction
ENSG00000150593	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv24150	chr10:112563598-112568976	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
3	chr10:112559400-112567200	Weak transcription	Right Ventricle	heart
4	chr10:112561600-112564400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:112561600-112564400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:112561600-112564400	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr10:112561600-112564400	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:112561600-112565600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:112561800-112564200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:112561800-112564200	Enhancers	Adipose Nuclei	Adipose
11	chr10:112561800-112564200	Enhancers	Brain Anterior Caudate	brain
12	chr10:112561800-112564200	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:112561800-112564200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:112561800-112564200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:112561800-112564200	Enhancers	Small Intestine	intestine
16	chr10:112561800-112564200	Enhancers	HMEC	breast
17	chr10:112561800-112564400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:112561800-112565000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:112561800-112565200	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:112561800-112565200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr10:112561800-112565400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:112561800-112565600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr10:112561800-112565600	Enhancers	Colon Smooth Muscle	Colon
24	chr10:112561800-112565600	Enhancers	Fetal Thymus	thymus
25	chr10:112562000-112564200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:112562000-112564200	Enhancers	Thymus	Thymus
27	chr10:112562000-112564200	Enhancers	NH-A	brain
28	chr10:112562000-112564400	Enhancers	Fetal Intestine Small	intestine
29	chr10:112562000-112565000	Enhancers	Primary B cells from cord blood	blood
30	chr10:112562000-112565000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:112562000-112565000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr10:112562000-112565000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:112562000-112565400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr10:112562000-112565600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr10:112562000-112565600	Enhancers	Stomach Mucosa	stomach
36	chr10:112562200-112564200	Enhancers	Liver	Liver
37	chr10:112562200-112564200	Enhancers	Fetal Muscle Leg	muscle
38	chr10:112562200-112564200	Enhancers	Fetal Stomach	stomach
39	chr10:112562200-112564200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr10:112562200-112564200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:112562200-112564200	Flanking Active TSS	GM12878-XiMat	blood
42	chr10:112562200-112564800	Enhancers	Fetal Intestine Large	intestine
43	chr10:112562200-112565000	Enhancers	Primary hematopoietic stem cells	blood
44	chr10:112562200-112565800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr10:112562400-112564200	Enhancers	Brain Angular Gyrus	brain
46	chr10:112562400-112564200	Enhancers	Colonic Mucosa	Colon
47	chr10:112562400-112564800	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr10:112562400-112566400	Enhancers	Esophagus	oesophagus
49	chr10:112562600-112564200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:112562600-112564200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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